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Merge branch 'master' of https://github.com/soedinglab/plass into hyb…

…ridassembler
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AnnSeidel committed Mar 17, 2020
2 parents a17e647 + f9fd6c7 commit 63193c8d06e8876e652d4052fe30a0016a2e029a
Showing with 5 additions and 3 deletions.
  1. +1 −0 .travis.yml
  2. +4 −3 README.md
@@ -87,6 +87,7 @@ matrix:
- zlib
- bzip2
- libomp
update: true

before_install:
- export CC
@@ -18,11 +18,12 @@ Each catalog is a single FASTA file containing the sequences, the header identif
The catalogues can be downloaded [here](http://wwwuser.gwdg.de/~compbiol/plass/current_release/).
We provide a [HH-suite3](https://github.com/soedinglab/hh-suite) database called "BFD" containing sequences from the Metaclust, SRC, MERC and Uniport at [here](https://bfd.mmseqs.com/).

### Install static Linux version
### Install Plass
Plass can be install via [conda](https://github.com/conda/conda) or as statically compiled Linux version. Plass requires a 64-bit Linux/MacOS system (check with `uname -a | grep x86_64`) with at least the SSE4.1 instruction set.

conda install -c biocore plass
# latest static linux build s
# install from bioconda
conda install -c conda-forge -c bioconda plass
# latest static linux build
wget https://mmseqs.com/plass/plass-static_sse41.tar.gz; tar xvfz plass-static_sse41.tar.gz; export PATH=$(pwd)/plass/bin/:$PATH


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