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martin-steinegger committed Dec 10, 2019
1 parent cc8015b commit 86e00783a7aac98496e2c202c0aff26a38a85066
Showing with 5 additions and 1 deletion.
  1. +5 −1
@@ -34,7 +34,11 @@ Plass can assemble both paired-end reads (FASTQ) and single reads (FASTA or FAST

# assemble single-end reads
plass assemble examples/reads_1.fastq.gz assembly.fas tmp

# assemble single-end reads using stdin
cat examples/reads_1.fastq.gz | plass assemble stdin assembly.fas tmp

Important parameters:

--min-seq-id Adjusts the overlap sequence identity threshold

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