use Double quote to prevent globbing and word splitting

soedinglab · Nov 20, 2019 · b0615f79c9373d1856ce8d9e035632689ab864ff · b0615f7
1 parent 295ebd3
commit b0615f79c9373d1856ce8d9e035632689ab864ff
Unified Split

Showing with 2 additions and 2 deletions.

+1 −1 data/nuclassembler.sh

+1 −1 lib/mmseqs
diff --git a/data/nuclassembler.sh b/data/nuclassembler.sh
@@ -119,7 +119,7 @@ fi
 # select only sequences fullfilling a minimum length threshold
 if notExists "${RESULT}_filtered.index"; then
     # shellcheck disable=SC208
-    awk -v thr=${MIN_CONTIG_LEN}  '$3 > (thr+1) { print }' "${RESULT}_only_assembled.index" > "${RESULT}_only_assembled_filtered.index"
+    awk -v thr="${MIN_CONTIG_LEN}" '$3 > (thr+1) { print }' "${RESULT}_only_assembled.index" > "${RESULT}_only_assembled_filtered.index"
 fi
 
 # create fasta output

diff --git a/lib/mmseqs b/lib/mmseqs