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use Double quote to prevent globbing and word splitting

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AnnSeidel committed Nov 20, 2019
1 parent 295ebd3 commit b0615f79c9373d1856ce8d9e035632689ab864ff
Showing with 2 additions and 2 deletions.
  1. +1 −1 data/nuclassembler.sh
  2. +1 −1 lib/mmseqs
@@ -119,7 +119,7 @@ fi
# select only sequences fullfilling a minimum length threshold
if notExists "${RESULT}_filtered.index"; then
# shellcheck disable=SC208
awk -v thr=${MIN_CONTIG_LEN} '$3 > (thr+1) { print }' "${RESULT}_only_assembled.index" > "${RESULT}_only_assembled_filtered.index"
awk -v thr="${MIN_CONTIG_LEN}" '$3 > (thr+1) { print }' "${RESULT}_only_assembled.index" > "${RESULT}_only_assembled_filtered.index"
fi

# create fasta output

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