Sol Genomics Network
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Pinned repositories
The code behind the Sol Genomics Network and Cassavabase website
JavaScript BrAPI Client with support for asynchronous interdependent calls.
Scripts and libraries for managing the SGN Phenome database
code and database for the expression query, mining, analysis, and visualization tools
web interface for Yambase database
Web interface for SweetPotatoBase website
The mason components for the cassbase database, a variation of cassavabase for the CASS project
Cassavabase - A website for Cassava research
P. patens Expression Atlas custom parts
Management modules for ITAG (International Tomato Annotation Group) pipeline
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
R packages
user interface for the citrusgreening site https://citrusgreening.org/
Tool for viewing physical observations study layout and assayed traits.
Various Modules relating to SGN
The user interface for the kelp database
general bioinformatics tools, non-project-specific
This code allow to transpose huge csv matrix. It's RAM efficient: Doesn't load the whole matrix in memory
Interface for the potatobase database
Standalone installation of a genome/phenome website and database.
Breeders Expression Atlas - For visualizing field plot phenotypes
