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Processors for knowledge input (:py:mod:`indra.sources`)

INDRA interfaces with and draws knowledge from many sources including reading systems (some that extract biological mechanisms, and some that extract general causal interactions from text) and also from structured databases, which are typically human-curated or derived from experimental data.

Biology-oriented Reading Systems

.. toctree::
   :maxdepth: 3

   reach/index
   trips/index
   sparser/index
   medscan/index
   tees/index
   isi/index
   geneways/index

General Purpose Reading Systems

.. toctree::
   :maxdepth: 3

   eidos/index
   cwms/index
   sofia/index
   hume/index

Standard Molecular Pathway Databases

.. toctree::
   :maxdepth: 3

   bel/index
   biopax/index
   signor/index
   biogrid/index

Custom Knowledge Bases

.. toctree::
   :maxdepth: 3

   tas/index
   lincs_drug/index
   ndex_cx/index
   indra_db_rest/index