From 854af7573383a1c375a614816da3423d63d54b40 Mon Sep 17 00:00:00 2001 From: "C. Titus Brown" Date: Sat, 11 Jun 2016 21:52:17 -0700 Subject: [PATCH] ok, better understanding --- Dockerfile | 3 +-- demo/00-demo.ipynb | 4 ++-- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/Dockerfile b/Dockerfile index b68c66851..24b993a8f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -17,7 +17,6 @@ RUN apt-get update && \ RUN cd /home && \ git clone https://github.com/dib-lab/sourmash.git -b ${SOURMASH_VERSION} && \ cd sourmash && \ - python setup.py install && \ - python setup.py build_ext -i + python setup.py install USER main diff --git a/demo/00-demo.ipynb b/demo/00-demo.ipynb index f1dadbc82..669866d4f 100644 --- a/demo/00-demo.ipynb +++ b/demo/00-demo.ipynb @@ -407,7 +407,7 @@ } ], "source": [ - "!../sourmash compare ../urchin/*.sig -o urchin.npy > /dev/null && echo success || echo fail" + "!sourmash compare ../urchin/*.sig -o urchin.npy > /dev/null && echo success || echo fail" ] }, { @@ -491,7 +491,7 @@ } ], "source": [ - "!../sourmash compare ../urchin/miniata*.sig ../urchin/pectinifera*.sig -o patiria.npy > /dev/null \\\n", + "!sourmash compare ../urchin/miniata*.sig ../urchin/pectinifera*.sig -o patiria.npy > /dev/null \\\n", " && echo success || echo fail\n" ] },