MetaMSD

MetaMSD: Meta analysis for Mass Spectrometry Data MetaMSD integrates quantitative proteomic results from multiple experiments.

Developers

So Young Ryu and George A. Wendt

Reference

Ryu, S. Y., & Wendt, G. A. (2019). MetaMSD: meta analysis for mass spectrometry data. PeerJ, 7, e6699.

Details

This repository contains a MetaMSD manual, a MetaMSD Rscript (in MetaMSD folder), and example datasets (in Data folder). The Data folder contains the followings:

1. Two thousands simulated datasets and example simulation R code,
2. Kidney Transplant proteomic data including preprocess details, MetaMSD input files, protein quantification information, and an example R script that converts MSstats outputs to MetaMSD inputs, and
3. Breast Cancer proteomic data including preprocess details, MetaMSD input files, and protein quantification data.