diff --git a/Manifest.txt b/Manifest.txt
index 18e6878673..809c2ec30a 100644
--- a/Manifest.txt
+++ b/Manifest.txt
@@ -1,4 +1,5 @@
 .autotest
+.editorconfig
 .gemtest
 .travis.yml
 CHANGELOG.ja.rdoc
@@ -48,6 +49,7 @@ ext/java/nokogiri/XmlXpathContext.java
 ext/java/nokogiri/XsltStylesheet.java
 ext/java/nokogiri/internals/ClosedStreamException.java
 ext/java/nokogiri/internals/HtmlDomParserContext.java
+ext/java/nokogiri/internals/IgnoreSchemaErrorsErrorHandler.java
 ext/java/nokogiri/internals/NokogiriBlockingQueueInputStream.java
 ext/java/nokogiri/internals/NokogiriDocumentCache.java
 ext/java/nokogiri/internals/NokogiriDomParser.java
@@ -74,6 +76,33 @@ ext/java/nokogiri/internals/XmlDeclHandler.java
 ext/java/nokogiri/internals/XmlDomParserContext.java
 ext/java/nokogiri/internals/XmlSaxParser.java
 ext/java/nokogiri/internals/XsltExtensionFunction.java
+ext/java/nokogiri/internals/c14n/AttrCompare.java
+ext/java/nokogiri/internals/c14n/C14nHelper.java
+ext/java/nokogiri/internals/c14n/CanonicalFilter.java
+ext/java/nokogiri/internals/c14n/CanonicalizationException.java
+ext/java/nokogiri/internals/c14n/Canonicalizer.java
+ext/java/nokogiri/internals/c14n/Canonicalizer11.java
+ext/java/nokogiri/internals/c14n/Canonicalizer11_OmitComments.java
+ext/java/nokogiri/internals/c14n/Canonicalizer11_WithComments.java
+ext/java/nokogiri/internals/c14n/Canonicalizer20010315.java
+ext/java/nokogiri/internals/c14n/Canonicalizer20010315Excl.java
+ext/java/nokogiri/internals/c14n/Canonicalizer20010315ExclOmitComments.java
+ext/java/nokogiri/internals/c14n/Canonicalizer20010315ExclWithComments.java
+ext/java/nokogiri/internals/c14n/Canonicalizer20010315OmitComments.java
+ext/java/nokogiri/internals/c14n/Canonicalizer20010315WithComments.java
+ext/java/nokogiri/internals/c14n/CanonicalizerBase.java
+ext/java/nokogiri/internals/c14n/CanonicalizerPhysical.java
+ext/java/nokogiri/internals/c14n/CanonicalizerSpi.java
+ext/java/nokogiri/internals/c14n/Constants.java
+ext/java/nokogiri/internals/c14n/ElementProxy.java
+ext/java/nokogiri/internals/c14n/HelperNodeList.java
+ext/java/nokogiri/internals/c14n/IgnoreAllErrorHandler.java
+ext/java/nokogiri/internals/c14n/InclusiveNamespaces.java
+ext/java/nokogiri/internals/c14n/InvalidCanonicalizerException.java
+ext/java/nokogiri/internals/c14n/NameSpaceSymbTable.java
+ext/java/nokogiri/internals/c14n/NodeFilter.java
+ext/java/nokogiri/internals/c14n/UtfHelpper.java
+ext/java/nokogiri/internals/c14n/XMLUtils.java
 ext/nokogiri/depend
 ext/nokogiri/extconf.rb
 ext/nokogiri/html_document.c
@@ -210,7 +239,32 @@ lib/nokogiri/xslt.rb
 lib/nokogiri/xslt/stylesheet.rb
 lib/xercesImpl.jar
 lib/xsd/xmlparser/nokogiri.rb
+ports/patches/libxml2/0001-Fix-parser-local-buffers-size-problems.patch
+ports/patches/libxml2/0002-Fix-entities-local-buffers-size-problems.patch
+ports/patches/libxml2/0003-Fix-an-error-in-previous-commit.patch
+ports/patches/libxml2/0004-Fix-potential-out-of-bound-access.patch
+ports/patches/libxml2/0005-Detect-excessive-entities-expansion-upon-replacement.patch
+ports/patches/libxml2/0006-Do-not-fetch-external-parsed-entities.patch
+ports/patches/libxml2/0007-Enforce-XML_PARSER_EOF-state-handling-through-the-pa.patch
+ports/patches/libxml2/0008-Improve-handling-of-xmlStopParser.patch
+ports/patches/libxml2/0009-Fix-a-couple-of-return-without-value.patch
+ports/patches/libxslt/0001-Adding-doc-update-related-to-1.1.28.patch
+ports/patches/libxslt/0002-Fix-a-couple-of-places-where-f-printf-parameters-wer.patch
+ports/patches/libxslt/0003-Initialize-pseudo-random-number-generator-with-curre.patch
+ports/patches/libxslt/0004-EXSLT-function-str-replace-is-broken-as-is.patch
+ports/patches/libxslt/0006-Fix-str-padding-to-work-with-UTF-8-strings.patch
+ports/patches/libxslt/0007-Separate-function-for-predicate-matching-in-patterns.patch
+ports/patches/libxslt/0008-Fix-direct-pattern-matching.patch
+ports/patches/libxslt/0009-Fix-certain-patterns-with-predicates.patch
+ports/patches/libxslt/0010-Fix-handling-of-UTF-8-strings-in-EXSLT-crypto-module.patch
+ports/patches/libxslt/0013-Memory-leak-in-xsltCompileIdKeyPattern-error-path.patch
+ports/patches/libxslt/0014-Fix-for-bug-436589.patch
 ports/patches/libxslt/0015-Fix-mkdir-for-mingw.patch
+suppressions/README.txt
+suppressions/nokogiri_ree-1.8.7.358.supp
+suppressions/nokogiri_ruby-1.8.7.370.supp
+suppressions/nokogiri_ruby-1.9.2.320.supp
+suppressions/nokogiri_ruby-1.9.3.327.supp
 tasks/nokogiri.org.rb
 tasks/test.rb
 test/css/test_nthiness.rb
@@ -221,6 +275,7 @@ test/decorators/test_slop.rb
 test/files/2ch.html
 test/files/address_book.rlx
 test/files/address_book.xml
+test/files/atom.xml
 test/files/bar/bar.xsd
 test/files/bogus.xml
 test/files/dont_hurt_em_why.xml
@@ -239,6 +294,7 @@ test/files/saml/xenc_schema.xsd
 test/files/saml/xmldsig_schema.xsd
 test/files/shift_jis.html
 test/files/shift_jis.xml
+test/files/shift_jis_no_charset.html
 test/files/snuggles.xml
 test/files/staff.dtd
 test/files/staff.xml