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Sparks lab, Laboratory of Structural Bioinformatics

Yaoqi's lab

Popular repositories

  1. RNAcmap_standalone RNAcmap_standalone Public

    Forked from tcgriffith/RNAcmap-1

    A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

    Perl 1

  2. dfire_rna dfire_rna Public

    Forked from tcgriffith/dfire_rna

    C++

  3. CODA CODA Public

    Forked from zh3zh/CODA

    This is the method CODA(covariation-induced deviation of activity) introduced in the paper "Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-…

    Roff

  4. SPOT-RNA SPOT-RNA Public

    Forked from jaswindersingh2/SPOT-RNA

    SPOT-RNA: RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

    Perl

  5. HiTS-seq HiTS-seq Public

    Python

  6. RNA-BRiQ RNA-BRiQ Public

    Forked from Jian-Zhan/RNA-BRiQ

    Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential

    C++

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