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Sparks lab, Laboratory of Structural Bioinformatics

Yaoqi's lab

Popular repositories Loading

  1. Forked from tcgriffith/dfire_rna

    C++

  2. CODA Public

    Forked from zh3zh/CODA

    This is the method CODA(covariation-induced deviation of activity) introduced in the paper "Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-…

    Roff

  3. SPOT-RNA Public

    Forked from jaswindersingh2/SPOT-RNA

    SPOT-RNA: RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

    Perl

  4. Forked from tcgriffith/RNAcmap-1

    A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

    Perl

  5. HiTS-seq Public

    Python

  6. RNA-BRiQ Public

    Forked from Jian-Zhan/RNA-BRiQ

    Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential

    C++

Repositories

  • SPOT-RNA-2D Public

    SPOT-RNA-2D: Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred base-pairing and evolutionary-derived coupling

    Perl 0 MIT 1 0 0 Updated Aug 27, 2021
  • HiTS-seq Public
    Python 0 MIT 0 0 0 Updated Apr 9, 2021
  • RNA-BRiQ Public

    Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential

    C++ 0 2 0 0 Updated Apr 3, 2021
  • RNAcmap_standalone Public

    A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

    Perl 0 2 0 0 Updated Nov 5, 2020
  • SPOT-RNA Public

    SPOT-RNA: RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

    Perl 0 MPL-2.0 20 0 0 Updated Jul 17, 2020
  • CODA Public

    This is the method CODA(covariation-induced deviation of activity) introduced in the paper "Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity".

    Roff 0 MIT 2 0 0 Updated Dec 21, 2019
  • C++ 0 2 0 0 Updated Aug 10, 2019

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