Learning Objectives # 2023-summer-school- Date created/updated: December, 9, 2024. Managing research effectively, 2023 online summer school by Narayanan A, Lahiri C & Pawar S, Center for Research, Innovation & Translation, Department of Biotechnology, Atmiya University, India., Gujarat State Biotechnology Mission (GSBTM) and Department of Science and Technology, Government of Gujarat, Rajkot, India. Link https://youtu.be/t0jIx5Ch4Io 2023 online summer school Sum 2023 (30 students). selected function(getGEO, normalize.quantiles, merge, cluster_analysis, hclust, Kmeans, mas5, rowMeans, randomForest, survfit, chisq.test, pData, rep, colnames, factor, eBayes, decideTests, topTable, read.tree, plot, str, write.tree, library, setwd, ReadAffy, exprs, read.csv, CreateSeuratObject, FeatureScatter, NormalizeData, reduce.dimensions, FindNeighbors, FindClusters, RunTSNE, RunUMAP, use.phate, get.species.cells, make_analysis_from_table, plotCurveHeatmaps, plotPseudoTime, runPseudoTimeDGE, runSlignshot, read.delim, write.table, roundPhylogram, unroot, str, write.tree, RMA, read.table, BGmix, ccParams, TailPP, ccTrace, histTailPP, FDRplotTailPP, histccPred, plotFDR, plotPredChecks, exprSet).
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https://www.r-project.org/ https://www.bioconductor.org/packages/3.21/BiocViews.html#___Software https://bioconductor.org/packages/release/bioc/html/GenomicFeatures.html https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html https://www.bioconductor.org/packages/release/bioc/html/enrichplot.html https://ggplot2.tidyverse.org/ https://cran.r-project.org/package=randomForest https://topepo.github.io/caret/ https://bioconductor.org/packages/release/bioc/html/DESeq2.html https://cran.r-project.org/package=missForest https://bioconductor.org/packages/release/bioc/html/affy.html https://bioconductor.org/packages/release/bioc/html/limma.html https://rstudio.github.io/DT/ https://bioconductor.org/packages/release/bioc/html/edgeR.html https://apps.cytoscape.org/apps/cytohubba https://cytoscape.org/ https://string-db.org/ https://www.gsea-msigdb.org/ https://bioconductor.org/packages//2.13/bioc/html/BGmix.html https://ggplot2.tidyverse.org/ https://www.htmlwidgets.org/ https://cran.r-project.org/package=cluster https://cran.r-project.org/package=fpc https://cran.r-project.org/package=survival https://www.bioconductor.org/packages/release/bioc/html/multiClust.html https://www.bioconductor.org/packages/release/bioc/html/GEOquery.html https://cran.r-project.org/package=dendextend https://cran.r-project.org/package=amap https://www.bioconductor.org/packages/release/bioc/html/preprocessCore.html https://www.bioconductor.org/packages/3.21/BiocViews.html#___Software https://shiny.posit.co/ https://cran.r-project.org/package=ggbeeswarm https://cran.r-project.org/package=speedglm https://magrittr.tidyverse.org/
https://www.python.org/ https://scikit-learn.org/ https://pandas.pydata.org/ https://matplotlib.org/ https://www.tidyverse.org/ https://numpy.org/ https://www.tensorflow.org/ https://kivy.org/ https://pydicom.github.io/ https://docs.python.org/3/library/shlex.html https://scipy.org/ https://scikit-image.org/ https://seaborn.pydata.org/ https://librosa.org/doc/ https://docs.python.org/3/library/glob.html https://pytorch.org/ https://pydicom.github.io/ https://biopython.org/docs/dev/api/Bio.Blast.html https://pypi.org/project/openai/0.26.5/ https://docs.python.org/3/library/tkinter.html https://docs.fast.ai/ https://pypi.org/project/torchvision/