diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.json b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.json index cfed013a593..e903e2d4474 100644 --- a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-amu01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-amu01 -o sub-amu01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.nii.gz index b07feeb8d74..809c1685d9c 100644 --- a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37947--f18753bdda9d668a65b3c3401b1dea42a3691a48b59f53211e18fac52921caaf.nii.gz +/annex/objects/SHA256E-s37153--b7d6a420a9169c8e4a980472c15a3bd08964be6ba1b854a83a1c87e34253155d.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.json index 11b53096f6e..782deaa724b 100644 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:41:44" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-amu02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-amu02 -o sub-amu02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.nii.gz index 9dc0f1d1222..811ccc113f3 100644 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69769--79b1a5e51fc42b153d85769b24136a7699956dc000b37e9e25d82cd6c2750b21.nii.gz +/annex/objects/SHA256E-s37358--c12f647257e3ffe3bc7d6f43419a7bd4944cdfa3385eedd4fa8ff22f4f59c779.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.json index 7bdb4eb0713..9bf8f6d6b56 100644 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:44:48" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-amu03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-amu03 -o sub-amu03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.nii.gz index 69c601d8b17..3d6d7570fc9 100644 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67911--1a8b5161a402b89b5883d8d798f61fc86d2ac95e256f1516df00d4a92f750851.nii.gz +/annex/objects/SHA256E-s36018--a0fb9ec83387411f8b41e04d765207471256d3bf168eb38413af88957486848d.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.json index 687b980d83a..f8cca762996 100644 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:59:46" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-amu04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-amu04 -o sub-amu04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.nii.gz index 45dc683cd99..e1c5d93310c 100644 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68671--8378a697d12e939ebdd72d497bf3cefe10b60719fed66f080c71df0d1cb36e11.nii.gz +/annex/objects/SHA256E-s36461--f35266585213728f78d5c3274c42955bf170e88b373f1283c4fe4d84ace63cb8.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.json index cfed013a593..848249bad5a 100644 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-amu05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-amu05 -o sub-amu05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.nii.gz index 7d28787f13f..ca4d361f687 100644 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37258--d9067ba0048d03fdefe360d9d3a24c8c1b46d6472db638975880c7fa1b390fb3.nii.gz +/annex/objects/SHA256E-s36617--f69984b3f426799db2e2b7b64d7b2b1a1982de57167968f55da459f535a28a13.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.json index e7d615b3027..e0d35684f00 100644 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-balgrist01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-balgrist01 -o sub-balgrist01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.nii.gz index ab7311d89d2..e165df20ae8 100644 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36577--76e00ce1f62b162f5daf6c8f79c7e63ac43e834bdf1ab4dde6b028546b558d96.nii.gz +/annex/objects/SHA256E-s36513--4be40587a3970cf5194d54649636bae1ab377519907075a1a78c3e64275a4978.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.json index f119affa0f7..6aa00226f64 100644 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:27:30" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-balgrist02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-balgrist02 -o sub-balgrist02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.nii.gz index d76816a4061..565b3de0564 100644 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68898--41fa60a65329319117bfbae8075d6c429fa88072d8954fbbe736f4cd3a644360.nii.gz +/annex/objects/SHA256E-s37171--a32d4cf21de6d5abfbee010d72d983abbe3de7293efc2ac80fcad61418e01868.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.json index 0ba2d27de80..e958b7398e2 100644 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:09:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-balgrist03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-balgrist03 -o sub-balgrist03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.nii.gz index 84169853b79..5cdf2519b75 100644 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68914--0da7f8bb447ecd7f86fe0c9b717d22ed3fc5d8c509305134f56136de642ad126.nii.gz +/annex/objects/SHA256E-s36847--830d252034afa23466b429de8a1fc4809fc5a1c5db01346d01785f19efcfbd6e.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.json index b0f00f72b70..8fec42bac29 100644 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:15:27" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-balgrist04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-balgrist04 -o sub-balgrist04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.nii.gz index fbcb2ea019a..4101b9b632c 100644 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70304--c3327b12d1245be22b768186cce352e7283d4276f79b8995a6cf5696abf1272f.nii.gz +/annex/objects/SHA256E-s37535--d2792c418c2d133278e2e99d6f9bb92eb0fde6748afa21cc66b59a492fda6800.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.json index 16e5b230836..1594e33d841 100644 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:26:52" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-balgrist05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-balgrist05 -o sub-balgrist05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.nii.gz index 959919d46a2..e9c82c2580d 100644 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69164--be33ae196ac1d11b6a618956f0f7f74287df35818d30c2098d8d3e70a2c30511.nii.gz +/annex/objects/SHA256E-s36757--b0f15a8e52982bc399956118bf8856d317ccaefddd433234d3e3c00c20eb2e57.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.json index e7d615b3027..9a2c23c8788 100644 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-balgrist06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-balgrist06 -o sub-balgrist06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.nii.gz index 9bcfc9b025e..68e0695d303 100644 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37101--1540e1c586bc7bae607ec112dfbea26b468517152a9cfc0a4f60c763dbe1ce73.nii.gz +/annex/objects/SHA256E-s36929--02629af4b689ac1146aaddf74e1a7ac42ae557f0b8e2b3bfc84771b6847f6a69.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.json index e090c9ebd46..9da2bf67153 100644 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:22:42" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-barcelona05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-barcelona05 -o sub-barcelona05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.nii.gz index adb9537c7d5..14e40e3d937 100644 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69672--2d55147526141cb1df75d4a3a6ff4dbddc48f3b39fe95ac23e1411e3f59836bc.nii.gz +/annex/objects/SHA256E-s37918--a72187725873c748b5c8ce537429f2122fe2a8504915f9163cef44a074b2f303.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.json index e894bbbd497..9745a4ed97a 100644 --- a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-barcelona06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-barcelona06 -o sub-barcelona06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.nii.gz index 12d3f17caa6..30e2fbaf6d7 100644 --- a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s38766--9fc6aa31da23d8266351b6948419764a2b537946b59543856fb8aeba82379a17.nii.gz +/annex/objects/SHA256E-s38467--25b650943e83c321d9b0ae197e0676dae7801fd0a578fee8b65bb23b974f2a58.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.json index 472af0f9bcd..e50e0f16832 100644 --- a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:47:22" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingGE01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingGE01 -o sub-beijingGE01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.nii.gz index 8ad6f7dccb7..4ea8d5e2e0b 100644 --- a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s60232--8e082ded5fa32cf4fe5d9428fc2e654f3bdd20e367e3138443b8d2cb67497738.nii.gz +/annex/objects/SHA256E-s32832--ae0cba327fcb0b14177ead97a21898affe90a7eb36ecedeede27b6a57a261604.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.json index e894bbbd497..24d5b582348 100644 --- a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingGE02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingGE02 -o sub-beijingGE02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.nii.gz index a44b3c0fd07..43d5d7a9408 100644 --- a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s32738--769e497a0903ac7bb55f5b0e41d4647b7f4661510c0bcc509add56b63f394191.nii.gz +/annex/objects/SHA256E-s32991--5141a70e8b16f6b8e6e770457a428f578230fd33c5192dbee2bc0ff08da8db55.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.json index a8246f96ef3..8cf28d9de3a 100644 --- a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:16:51" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingGE03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingGE03 -o sub-beijingGE03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.nii.gz index 63933717bc9..d43055645ba 100644 --- a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s60766--703b0e8f46d479c3da01861f2cc91e90ddcebf2adc88e232610750a26aa3b160.nii.gz +/annex/objects/SHA256E-s33571--72f5bcdeddf0ba81e2a38e11960639c4f7e1160137d067ed44e43f0f6559bd4e.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.json index e894bbbd497..a262fd5cf4a 100644 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingPrisma01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingPrisma01 -o sub-beijingPrisma01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.nii.gz index 23482cb60cb..794cad20c2f 100644 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37394--cc31b7c39a145b3180d1956523bf5e5cad369cb6a8983ce59d3d766d4a316999.nii.gz +/annex/objects/SHA256E-s37366--a132308f4a4a592457dc7cf2d77cc8759d10ea5a79979b75c7c35a577d65eb78.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.json index 6acd3c8d583..4f2afb5c8c2 100644 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingPrisma04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingPrisma04 -o sub-beijingPrisma04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.nii.gz index 856afbfcbb4..e6c1ce742a6 100644 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37216--e81e6d15cd5a2cad96cd9fb0c8ca3bb652ac9a0cc9b650346076f7798f700d3f.nii.gz +/annex/objects/SHA256E-s36983--bfc4edfbadc5949c430a5e39256b63d10cda86a6e5694be41a1c3ba152fbde5a.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.json index 0f8c7caa10d..d080f7fdd77 100644 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:34:40" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingPrisma05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingPrisma05 -o sub-beijingPrisma05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.nii.gz index 3fcc00efc3a..159558f283b 100644 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70711--ff2a76bcc89e55b5cc68d22c04bc37ae56ff0176f807557434012b42649bee2d.nii.gz +/annex/objects/SHA256E-s38214--eb38df0b6d9c4dfdf322067938b513a02fe608bef32b3ef1fb92c7edee7381ba.nii.gz diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.json index 816d620c223..da4e49de68c 100644 --- a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:30:30" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingVerio01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingVerio01 -o sub-beijingVerio01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.nii.gz index 5109c97fa35..0830f29d1ed 100644 --- a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68336--f3251ac7ad06a6ce063acdaf902f933905065aa6f27777a250a578016c46c573.nii.gz +/annex/objects/SHA256E-s35927--d8e04b6bddc0d3ce565e7e00683188d7aec4e6de92b7369afe215d3eee24b30d.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.json index cfe0bb59ed1..957a1197e94 100644 --- a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingVerio02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingVerio02 -o sub-beijingVerio02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.nii.gz index fab433e3e6c..3b5fc2604bc 100644 --- a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s65689--6985ee457cdbd459b46cf2d5085ee181a33fcd03b25a60f6894da9ce20549f06.nii.gz +/annex/objects/SHA256E-s36996--fe34921ba1a1d0c3353a775bd5f1ddc0349c2e6c95bdfcdbc23d8c377a9a2ae4.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.json index 7e82c0a0119..5d00f54e32d 100644 --- a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-14 13:56:00" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-beijingVerio03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-beijingVerio03 -o sub-beijingVerio03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.nii.gz index edd8bb5e7b0..491f6d08a66 100644 --- a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68710--4273d5bd42bf44f483498de08a48ade72ba8dc6df3396f17b499bdad4c45aa89.nii.gz +/annex/objects/SHA256E-s36331--977506ce8b96598db149bda4cfa9cca4c3527e9921e28de072cecfba90fd5fc0.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.json index 6acd3c8d583..bafa50deaa4 100644 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoCeitec01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoCeitec01 -o sub-brnoCeitec01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.nii.gz index 15522fa1656..642dd14da3c 100644 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37355--9660190c06bd097c59bc4b9d5dbef2f5858fa7164fe6e2e758ffddd70e238fae.nii.gz +/annex/objects/SHA256E-s36857--7097024459dd1d628a6c1b626139ddfa316041e731d3426987a515a53f1cc8ab.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.json index 767d64c2fac..8803be94f70 100644 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-21 13:48:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoCeitec02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoCeitec02 -o sub-brnoCeitec02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.nii.gz index d924ab2f1ce..fcacd5c14c3 100644 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68430--7f867823aa4fa2493c415428a17728d31373ce285f5f6bd7cbdb50b4adfba0be.nii.gz +/annex/objects/SHA256E-s36546--056ae6151ee7549275d2fdf03d8eab8a371521e4a7bec980384f4ee63e692a8e.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.json index 6acd3c8d583..9f76fd10cba 100644 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoCeitec03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoCeitec03 -o sub-brnoCeitec03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.nii.gz index a596af453fb..20b6e0ed4ae 100644 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37244--27c6f67eeb1bfbc9e6821903cd890c0e46fefb69bcb36d6cc9f5ba18c0e9d98a.nii.gz +/annex/objects/SHA256E-s36655--8b269224b8abe5f46f2c17ab0147554d75677cdec716d4f0a98d33c0caf661dd.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-SC_seg.json index 074853e17fe..00c35b46469 100644 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb01 -o sub-brnoUhb01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-SC_seg.nii.gz index b6b2ebb06cc..9d95eb4ef1e 100644 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s33897--348f981d68b7d2835634c4ad0fa65bc298fbd60f3e134586e7109b06f8a58c44.nii.gz +/annex/objects/SHA256E-s33587--cd4a9639f517c2d90a399d23ad27d0b6b63b737e2816722c37c3743e8f52bb4e.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.json index 1f34c268e2b..ac1fb99cfed 100644 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:30:02" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb02 -o sub-brnoUhb02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.nii.gz index 79806277e25..6006566e99b 100644 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s61332--24c492414a9e6ac7487431a6dbe8a4cabf316b2060f764caf2e3293e2ecdad59.nii.gz +/annex/objects/SHA256E-s33176--d019a49e5750298f1136ae14688c055cf6eedca87cd812854c26c0f614e598d0.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-SC_seg.json index 531cf1736a8..2b2e5a253eb 100644 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:13:34" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb04 -o sub-brnoUhb04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-SC_seg.nii.gz index cab4bad5cc8..927dbc4fab6 100644 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s60909--58949442711cb4e126be24c0a25245d16366ae2f3cb2b0861c8b849d67403490.nii.gz +/annex/objects/SHA256E-s32776--d84211bc8db4ae06848dcb2e91da37ff00abeab424fea1193f0467a25b6ca971.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.json index adee7bc47ed..26a646f492b 100644 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:55:46" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb05 -o sub-brnoUhb05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.nii.gz index d8d9296033c..aa0b9c4325b 100644 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s62650--5caebb935076f98324bb07cc0517d7468c074bb37b20b072913481dc87b57c22.nii.gz +/annex/objects/SHA256E-s33688--3860a247503d9b16bf0aeb951416f4ea3ae730e9c4a36ee5cdb68cfe2ef26ce3.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.json index 99b8bb36732..4ccb49483fa 100644 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:06:53" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb06 -o sub-brnoUhb06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.nii.gz index d886eaf0f90..38a09e69e55 100644 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s59506--7791cde759a66274f821858ae1cfea7f73b357db70d6b44293accd7bc44e768b.nii.gz +/annex/objects/SHA256E-s32789--6c453fc3c71b8b0806a44780f2a996b4761b59f2cb9191702cd4bf33057cb68e.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.json index 7fc789d132d..b878f5dd3a6 100644 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:07:45" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb07 -o sub-brnoUhb07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.nii.gz index af68908b643..5c36617dbfe 100644 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s59375--c0139871adac7a525f14cab23a4983d3c3702d94a67ab2541eff57468ee399a2.nii.gz +/annex/objects/SHA256E-s32437--c720a8fbb70347fa3cb4c919f03b07e947aae8e6c9f9843e13a9539a9b94e00f.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.json index 074853e17fe..a8921fdde9f 100644 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-brnoUhb08_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-brnoUhb08 -o sub-brnoUhb08_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.nii.gz index 995576f15dc..dabebd5c41e 100644 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s34244--acbae47efc2f059ce4a0fbf05bbf8179a2a24fceda5639893783b6ec591a89a0.nii.gz +/annex/objects/SHA256E-s34038--efbd2dd7d5895b96e40dd2c0bf58875e2aff061fc50a4ae03271dcbe57b0e0b4.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.json index 35b541b5d37..7d1fc8b54fe 100644 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:54:51" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cardiff01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cardiff01 -o sub-cardiff01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.nii.gz index c500a6210eb..f4a0951045b 100644 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69973--7b0f99e4267ca4abafea3aee89cea201e76eca92c082081075cb192216f3e9b0.nii.gz +/annex/objects/SHA256E-s37248--97601541a0c69be1eda529f06f586785a1c13b5afbb597e250315bb6d34ccf51.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.json index 1c487fe4818..4795beecd40 100644 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 12:58:35" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cardiff02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cardiff02 -o sub-cardiff02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.nii.gz index 5f969fb815e..85a3410ac59 100644 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70327--542ab5b69b82347f7b0608b588cc37cbce17cc8d8cd47e9b34ee0fa71b33b673.nii.gz +/annex/objects/SHA256E-s37309--133d0833b071c5b363e65bca8e626df8ef10a3259ffaaa8b44aa5d7afd0bcdb5.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.json index 626b3976bf1..91c25056786 100644 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cardiff03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cardiff03 -o sub-cardiff03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.nii.gz index b4bc0a03ffa..be1e6a3a897 100644 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37477--16b7d1448684043b8788bf0c889b67f99a1669883d78eef2f29559cf6a5703a1.nii.gz +/annex/objects/SHA256E-s37498--5c90e460bfbaa9d6b2eb4924f667dcbd03776592a35cedb90903a20949f6b625.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.json index 675191788be..4ae7408a426 100644 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:42:36" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cardiff04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cardiff04 -o sub-cardiff04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.nii.gz index 9c7d85546a3..7f6b33af481 100644 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69839--3971f3e75b391a50f68d5d1846aba0bdfebee893a9de6287f6a5fbb6f9717a73.nii.gz +/annex/objects/SHA256E-s37831--edbf9a98dcd90a2e79422c5c345f27461dbcb5d1d06809af999c0919fcd7b862.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.json index eef0661bef2..46bd7ee5187 100644 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:00:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrra01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrra01 -o sub-cmrra01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.nii.gz index 5571129901e..9db56ea021f 100644 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69083--b607587b54e25a8539a83d116584810c2b92a730aa482b5cc6e6a800742ce179.nii.gz +/annex/objects/SHA256E-s37164--d8d243a1828686b5a7c36756b7247ad2495a4d310c56494c33ec2d62f255479a.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.json index 006ded9d959..8ee727fbbfc 100644 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:46:55" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrra02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrra02 -o sub-cmrra02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.nii.gz index e51f83b40aa..0c22e514170 100644 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70743--cdf0aa55524d5da0d8da7aecec62bc9c3e6f77cfaee1251b4c67a223c74e1147.nii.gz +/annex/objects/SHA256E-s38173--fb87461add9127fb6d2496f8d50c0970638b5e5d0d0387a5e6340a2e3b674455.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.json index 5a9b427651e..7ddb02abc72 100644 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:35:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrra03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrra03 -o sub-cmrra03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.nii.gz index da0bd3ec2f5..06eab863680 100644 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68725--c9d7cf7f5fe67dd62fbd7042efd6aad42ed09a47dfdaf5ed7311466965421eb6.nii.gz +/annex/objects/SHA256E-s36709--266664f6c499258ec3eeb92acaecf0a43a897802b0eb797511fce9edc3ec345c.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.json index 46dbb92e5ab..e6543572b08 100644 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-25 10:10:47" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrra04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrra04 -o sub-cmrra04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.nii.gz index 4c11518271f..824f34c4b49 100644 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68937--2f66dab2a210772f8fa62964c92adfda866eed2a5ec253add9c52ec8e0208e24.nii.gz +/annex/objects/SHA256E-s37197--b2434d773d8426907bb349206942864692fbd72d8002244bd3a5c8fed5c3a659.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.json index 7ffd5274de2..198a794c384 100644 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:50:59" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrra05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrra05 -o sub-cmrra05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.nii.gz index 0182bda5cac..e623658534a 100644 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68518--bf8510273e3525530a156a3a147e611b39710d0da11c52accadce9aa3af5e45e.nii.gz +/annex/objects/SHA256E-s36594--a7d03e387e8ae5cb125e562080ca8e2617c0c77da5d868d9b11480a6195dc0ba.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.json index 2b9df813b07..b43659087d9 100644 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrra06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrra06 -o sub-cmrra06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.nii.gz index 1498b369c92..125a5bea570 100644 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37086--94df597af6e2240a8e21b1e2f881eed583de365ef4cbe0f5a8ab4af7fa94a908.nii.gz +/annex/objects/SHA256E-s37212--aae68612edba434981795c2d97774aba77f293c62d62320f5d9cb304851ae81b.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.json index 67bc6a452d0..c0a1c33483a 100644 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:03:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrrb01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrrb01 -o sub-cmrrb01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.nii.gz index c4a6848bd57..d16d595914f 100644 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68704--004718129af2f034a244b862531e1fdb154a502a9c49636e71ec090abb5627b3.nii.gz +/annex/objects/SHA256E-s36523--5e16fb5c5bc147b9d6567b3a4ca2639722ba177b9edb62b1ef69321e41274fe3.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.json index 3fb0f4dfb22..19a564a5cbc 100644 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:38:38" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrrb02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrrb02 -o sub-cmrrb02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.nii.gz index 88be1a58f62..2b298fff597 100644 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69175--26e2be576f40cad01283fd3c0da2a19d10657e5f26cf863ec6564bf8178c582a.nii.gz +/annex/objects/SHA256E-s37845--cd3b7bab27f3e6a797372c1c279594d2d39a8e30a5eba4c8e88a8faebe6361bc.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.json index e52165fdad5..574515574c9 100644 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:09:20" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrrb03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrrb03 -o sub-cmrrb03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.nii.gz index d521dc94497..a0529aab896 100644 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69377--3b4a4887e9b9a1585ef0c8fa1edfeaedce329adb707c6d5cbd0fdcb72c4955b6.nii.gz +/annex/objects/SHA256E-s37336--be073db78a1dd16dedb93d296820505b020b9d1408d1014c3cb25e60d61bc94f.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.json index e65d2472e42..932bf60306c 100644 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-25 11:13:59" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrrb04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrrb04 -o sub-cmrrb04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.nii.gz index 1ca44289754..f9ebe17b82a 100644 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67134--be4ac7dd410837a0ce6b14a4b111047dbeb9b3aae876290e34374446777b80c4.nii.gz +/annex/objects/SHA256E-s37201--18564b0f323271b2b56420cde6ebd60b83449ee90f27339891bf4f6f1e06df73.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.json index b8658dc5d36..9518b4211fd 100644 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:12:01" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-cmrrb07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-cmrrb07 -o sub-cmrrb07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.nii.gz index bdfc7355d7e..755f55bb98c 100644 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69236--8bdc5f9fd85e1f5b2b3db55cc1a55a1b44a896f1e2ff803bd1e17ab76147b4ff.nii.gz +/annex/objects/SHA256E-s37063--3f98b1252ade81bf6d4e6f061e4f4a4ae45225d7be54b0a34d6fc61638958a4d.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.json index aa815587eb1..97597cc69c0 100644 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:15:10" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-dresden01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-dresden01 -o sub-dresden01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.nii.gz index d3c0f0bc8e9..a0407474650 100644 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s71945--d56fa59e3e9e7c844fc1b1f27b0baf6739033f767fcee29e7f688e5f40e79248.nii.gz +/annex/objects/SHA256E-s38869--00d91ec6e1268523b1b52e8b38966b6639171c7590c139367bc22bb42d7ac49c.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.json index d70bee75690..3bb65991f2a 100644 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:17:33" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-dresden02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-dresden02 -o sub-dresden02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.nii.gz index 0a5756dd11a..062ee189ee9 100644 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s72130--4cba428eda4bcb5732850af08e1534935f76f5123a91d2f4db983a315e3f7161.nii.gz +/annex/objects/SHA256E-s38909--c6f160ae3b4a31175ea3d725b9eb6a54fa335d304ae3f259f5bf00050a07eafe.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.json index 5d6e9b777f8..32fad1dc964 100644 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:21:13" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslAchieva01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslAchieva01 -o sub-fslAchieva01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.nii.gz index 8579058b7c4..2241598e32a 100644 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s66482--d46f861f00af92c6fb4649328708eaf979639339567581f21478fd77b257a070.nii.gz +/annex/objects/SHA256E-s35356--7fe6e241710db1eacefc1b591c8b59d9e598227bfcce1bd3b01638090a2843e5.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.json index 3eb6511cfb2..b849c5c6ddc 100644 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:39:58" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslAchieva02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslAchieva02 -o sub-fslAchieva02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.nii.gz index 1aa427a9244..0534376979c 100644 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67402--3d4f8d1b6d3349292705a53e3f2327bdfe0ab08723db570ba9b71869c7e7d948.nii.gz +/annex/objects/SHA256E-s36157--44de4ca461236df1fceb83fd60957a2d040159723c4a0bcca8c0bc0d3aa5c2bd.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.json index 4c443539809..2af52c30701 100644 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslAchieva03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslAchieva03 -o sub-fslAchieva03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.nii.gz index a09d6a4bc9f..7c19d8c3321 100644 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s35601--926eee73141db487c9a84b2e82332a7b1e5d5e92f6ba39225750610a9226c3f5.nii.gz +/annex/objects/SHA256E-s35221--92b472596ba16536a22fbc2a81d2bb8640add8aec147c98f5c88bd02dd2a4c98.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.json index ab6ac65b3c2..80a31fa502f 100644 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:34:02" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslAchieva04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslAchieva04 -o sub-fslAchieva04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.nii.gz index d4b8268ff36..66012703329 100644 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67277--1e4a462755c055e71265e0657db9909748c88c4d2cddfc1b60b3a6bdbc269180.nii.gz +/annex/objects/SHA256E-s36285--6c48940e7d9bb12a1919606312129acd7b9ad65a0aee78ee2ab1892e14740aa0.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.json index 4c443539809..127fbb0bdf8 100644 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslAchieva05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslAchieva05 -o sub-fslAchieva05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.nii.gz index d1addbd7fdd..29317595d7b 100644 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36342--5c3533e3e56ece0782f6c841532c1613318f0c9ae63af849d9085d2f9e6996a8.nii.gz +/annex/objects/SHA256E-s35937--4a128294c25ce6ff8e44c669c5346d5498214f402008c6238737c4f9c03a7510.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.json index b04135d7e4b..e5130bffeba 100644 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslPrisma01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslPrisma01 -o sub-fslPrisma01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.nii.gz index 2182e3e3c0b..4fcc37fccdb 100644 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s38316--a281d75726435e1a1725c3cec94305c9dbd977272167d64a3c417ece6bc2e085.nii.gz +/annex/objects/SHA256E-s38119--fef5024d1030c23a058ef8e34bdf0a2890bfd38db7dfe982b746784d3d73991c.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.json index 35c531f1771..ac5e477c599 100644 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:50:28" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslPrisma03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslPrisma03 -o sub-fslPrisma03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.nii.gz index 73ef3661a53..01cdd3818bd 100644 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69998--05f5e74bae0ee304e5979f14bdbe22ae85440581825518ad4f58cb5e630f20bd.nii.gz +/annex/objects/SHA256E-s37300--27d6ba60678d5bb5ab09e858ff9d50bd48177f3bb8d1b82bcc05f2eaf7d90c3d.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.json index b04135d7e4b..a7dfd50b0d9 100644 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslPrisma04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslPrisma04 -o sub-fslPrisma04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.nii.gz index e911ccc809e..8b2c0225d5a 100644 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37358--9e2841e03e9d01431d0fba4079ee3fd63d37c7147dcb26a705796a470e1136d5.nii.gz +/annex/objects/SHA256E-s36999--c006f3568263e07c1cc8f941ce007d42677a0a76ae76397d5795b3201f8c0c5d.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.json index b04135d7e4b..ec04489acce 100644 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslPrisma05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslPrisma05 -o sub-fslPrisma05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.nii.gz index e857be087ed..facbf893a9b 100644 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37762--2f6aa141aa87ee840ff5722efa2b94e8d2e6ad9a648a751b15d6f9f9751f7b45.nii.gz +/annex/objects/SHA256E-s37092--aedc556beca76ab8418bbfc0ac95734f0b9265f1c457c4e503897ffd5d32b309.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.json index b04135d7e4b..db9fe7fbd1e 100644 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-fslPrisma06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-fslPrisma06 -o sub-fslPrisma06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.nii.gz index 38fd684a9ad..1f637b7864b 100644 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37713--40abef4f3863a158ff38fbe1a9b22b94a3ec421eb814c94e50fa2d138abf75fb.nii.gz +/annex/objects/SHA256E-s37563--e309a47a5d2062cd16046f8d65644aeaaf31aa5595984d14a5758424013c7c3e.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.json index faf3cd314ee..f465d86986e 100644 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:11:51" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-geneva01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-geneva01 -o sub-geneva01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.nii.gz index 2b9cb5b465c..73e51ecd1b4 100644 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69743--779dcb2648503d25e5cb84a84156b7f531bb5662000b235a4abaa08c368f76c3.nii.gz +/annex/objects/SHA256E-s37597--e387f4fb873a4d03d412e7477ed9b26ebb1ed9b1e9e3e90b0e77eeabb5c44938.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.json index f0ddd8ffa01..283d231c092 100644 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-28 16:16:03" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-geneva02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-geneva02 -o sub-geneva02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.nii.gz index 842ee8ad17d..75ca0db22a6 100644 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70385--10f4bd76b8125c408b81bb9c71dc57a4670d43b421bd7c355d9c96fda309660d.nii.gz +/annex/objects/SHA256E-s38448--82504fabf52e5c7cbfbb8300a1fc7b95d2d7eafcf421b75a45115ed23ae726b6.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.json index 019f5f8c5a9..5a7c04d3cd0 100644 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:57:19" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-geneva03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-geneva03 -o sub-geneva03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.nii.gz index 66069361658..8de6e74cb12 100644 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68726--d357a521e4d4e1fefddc3e07ac75a6d266112af186337eb0a8fe87e54877b76a.nii.gz +/annex/objects/SHA256E-s37462--bf55143660d17a56a6329b6bbaf6757b916fc70d619ee13c6c9a5fed7ef4cba7.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.json index 9b7e0bc6d28..2bf6cd252fd 100644 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:04:55" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-geneva04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-geneva04 -o sub-geneva04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.nii.gz index 0943e9dc98b..eee6534e6b8 100644 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67667--1359a56a5218021c151155f1d1217d03b13c119b56e366706f0672a962a337f0.nii.gz +/annex/objects/SHA256E-s36082--38bbeeca128a9928407ad8866b240c55f0c8b17ec6fdfe55da7493858f197836.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.json index 122e352cfe8..13e73afafa8 100644 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-geneva05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-geneva05 -o sub-geneva05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.nii.gz index e144bb30bbc..a8269245414 100644 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37442--1484ee6d5e32762cf8acc085132f9695cbf1f28c84664c1a7839521c293d82c6.nii.gz +/annex/objects/SHA256E-s37478--116591a1bb2ee291a729288a8b7a400bc676ae19ae79f742e4db016e6d422e43.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.json index fe795c460f5..3f420f68be1 100644 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-28 16:06:23" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-hamburg01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-hamburg01 -o sub-hamburg01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.nii.gz index d836cd7e1f9..6d6949edb5a 100644 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69057--10e5d5115dc7238c1b83371e754b01208db408a913b14f23d9a137bcb32cd65d.nii.gz +/annex/objects/SHA256E-s38035--9b2a951f1106a98f7ad793cbfe6143dba277e08bd1a79f228b22547a044ff9f6.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.json index 122e352cfe8..81bd25cba23 100644 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-hamburg03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-hamburg03 -o sub-hamburg03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.nii.gz index 63c1f00ca8e..33e0ba757ee 100644 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s38032--3df1c8204b761f3a012623734ee91514b3c6cd86f51587debd50c6936b73ffde.nii.gz +/annex/objects/SHA256E-s37755--5188afab7a50c3de3289c830e6081f3d1d332717b7453d6a8ef2ac51f4dc7c27.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.json index 122e352cfe8..575823b7372 100644 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-hamburg04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-hamburg04 -o sub-hamburg04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.nii.gz index 5b6237405f9..240c1021f94 100644 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37508--279d83192129feac49ee47ae7533ac4f21243b27fc5128378d1554de99bad298.nii.gz +/annex/objects/SHA256E-s37561--e4d211e522d2414bc2fafb12a06833ac7ffd0f4fa45c1ea5d9e8afaf541324c0.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.json index b7f424ba7e8..b56d185cca8 100644 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:17:31" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-hamburg06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-hamburg06 -o sub-hamburg06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.nii.gz index daded0e69c6..c2454c84551 100644 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69154--0879b1cd540b2b5663144816a802fbafb1ca921531f45b6dcf75c8448f63d1ae.nii.gz +/annex/objects/SHA256E-s37167--0d2c135af8a1fade60d8b967a05da5fd083684cacb18abcf078dd2af4a169e64.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.json index 1cce4cb1a31..4c12f1f1a0c 100644 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:35:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-juntendo750w01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-juntendo750w01 -o sub-juntendo750w01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.nii.gz index 5e653826888..9062beae001 100644 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s60785--77b0d0e20c7a3fa5b4c2b821e10e8693d071f1c294990959ec931bc86b482f99.nii.gz +/annex/objects/SHA256E-s33013--28369b4209313e89b0f24e817732d612a16024783c121a6570e5679f5b1721d8.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.json index 676d5b57e82..63bfe425ceb 100644 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-13 15:35:52" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-juntendo750w02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-juntendo750w02 -o sub-juntendo750w02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.nii.gz index c1abbe32682..16b831030f9 100644 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s60983--dfc84cc8e279f1fb045f9bdb7fd5c3d1e8363f409abfd9d66f1eb7b5a1aaf106.nii.gz +/annex/objects/SHA256E-s32802--7574d5a3a5354d51d84adf33d80c89212a4eeee20586b2cf73486254801d46db.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.json index c1b4649bc9c..214080cf6c3 100644 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-juntendo750w05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-juntendo750w05 -o sub-juntendo750w05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.nii.gz index 514d35fa244..2b1442df612 100644 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s32990--6a9b70f7dbee16e3227090e418269cf477d84f66b68e672455c097efc9622227.nii.gz +/annex/objects/SHA256E-s32624--d4dd91f31a17cb0ed9f6d56563ae870f29d0903790105659e8efd9b086e7e7db.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.json index c3b9243dc20..543f159f615 100644 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:42:08" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-juntendo750w06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-juntendo750w06 -o sub-juntendo750w06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.nii.gz index f1142f81948..81bfd2bc3aa 100644 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s61338--f3399b65da25f8c6788dbc95d86c665a041669e09e2ad8f5cb25bb330c27931a.nii.gz +/annex/objects/SHA256E-s33182--90fc5ab4667cf08ce9a72219d4a9d9e48b37c30527e7a9d7a27547be7810e22c.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.json index 9489bda74f1..494c5f1ba77 100644 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mgh01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mgh01 -o sub-mgh01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.nii.gz index 1c91590bcd7..999e8fe21dc 100644 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s38020--8f0f49db1fa9e9403b17fbd09a96a4370fb4be86bead43951a60a3ceb4d9e32b.nii.gz +/annex/objects/SHA256E-s37694--dcf8bd25ae231a26a3b65cdde5935b5318b37fbf96892ab5d5f691bd09ae8e19.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.json index 9489bda74f1..26adb8ae0b1 100644 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mgh02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mgh02 -o sub-mgh02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.nii.gz index efd9287d3a9..2adc958b503 100644 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s35733--ba0eff5ff6afaffc805c5028166d820455534cd26cca81f8b7589c0a558217b8.nii.gz +/annex/objects/SHA256E-s35762--bba624faad58395e3094d5bef2d8f81206d64218fb633bd4fc4fd67d70910a0b.nii.gz diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.json index 3632fdedd5e..0761be97a6a 100644 --- a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:52:01" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mgh04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mgh04 -o sub-mgh04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.nii.gz index 1312f096b55..1273796b01a 100644 --- a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70971--cc85265ee29f7e11ba7f55901f43bb0057cc74cb7b757dba9e4550f6cf661b0f.nii.gz +/annex/objects/SHA256E-s38242--8b599a58d39312b59a513d8087affadb09d0cac80575d4ad404bcfaa3044622f.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.json index 1b2db6f3f70..41a44f3993a 100644 --- a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 12:22:19" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mgh05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mgh05 -o sub-mgh05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.nii.gz index 9596481e264..13e86583713 100644 --- a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s71166--e8c97640c89e005de64a603f18cebf1b072d2a1be58f5342461dc27d6df3f54d.nii.gz +/annex/objects/SHA256E-s38660--ec602d8a01e00765cee8133c9ca94e1960ca9c3dcde9f7fb5bc71c643c4079dd.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.json index 3fcdbab292f..9c54a2bdeb2 100644 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mgh06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mgh06 -o sub-mgh06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.nii.gz index 662fe39e2b0..14e1951aa22 100644 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37831--9c83e97dcd280741d0ccafc346c9aad80e91bbb7d05cdfa8e1e74e27683ef1e5.nii.gz +/annex/objects/SHA256E-s37945--c702530e8783aa704f0262e9da54f59fe9b9c8256473a9ffc95d0607b9bdd9b3.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.json index 0b90108c89b..f085b0d1f3b 100644 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:12:54" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan01 -o sub-milan01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.nii.gz index b84ee4acbbd..131dbfabd6c 100644 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70794--26cf23dfec9ad5cf8347e04bb8bb56d6d7f0b2967bb051c63b6d0f711af113b6.nii.gz +/annex/objects/SHA256E-s38148--5a4bf4117d357ad6c8b285883799798328189c7058b8fd7d23acdc0b61b53731.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.json index 3fcdbab292f..eba9e0032c4 100644 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan02 -o sub-milan02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.nii.gz index c2fd14f16a7..cc04e0bb9bf 100644 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36797--43f54c12df2f8d100264b286106a27b076f423f76c8a09b20d085f0f82a08c92.nii.gz +/annex/objects/SHA256E-s36769--5c7aad39c82ec96bf1cd4489d2f593e533ea599a0fbcc6e6050c16389cf52be7.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.json index da0e23b1701..5c89e30681a 100644 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 12:38:24" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan03 -o sub-milan03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.nii.gz index 819e91e0c41..2ecf8a2b7bb 100644 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70071--58acaf81bf6785554a8a887676817963deb1f28b775ab1b270017a964d121a29.nii.gz +/annex/objects/SHA256E-s37899--906f5e74a2eef786bf82bcb556ab82eefdccb0c8bce5b315f466db7ba4b462df.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.json b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.json index c42c331bc12..b045dc07399 100644 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:20:22" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan04 -o sub-milan04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.nii.gz index 94a61c2f1c4..bbdc943e453 100644 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69178--455f827eeaf38a0c835936d2c1f858fc0f4e14a8146e4f7a4709af6a8fee7e7f.nii.gz +/annex/objects/SHA256E-s37208--898b22cba5431d213a3f071d6d8c0a187b5c59940fd583a01b9d129a944f531b.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.json b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.json index 954cc53b322..2db41fc1584 100644 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:40:37" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan05 -o sub-milan05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.nii.gz index b546bac79b2..d8fa7057c51 100644 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69715--cb1d7c87d0c64c35a8c5f01578413b17d49ac73a04e3b1a292c5e617d7a3f8c1.nii.gz +/annex/objects/SHA256E-s36881--c8e3f029bc85083eb4e4d750688d21511bdd2a22a6c4d4e6c125200d31dc28d3.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.json b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.json index 0e5228675c0..a514ed053ac 100644 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:24:33" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan06 -o sub-milan06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.nii.gz index 32526c71a3c..82f202d9522 100644 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69234--e57b3e1f6307821c6ac185f957734b9dda793e951c90e7e30d0a5ed0047bb506.nii.gz +/annex/objects/SHA256E-s37780--812f5d3b07a4e7cecb425d3089e4e2a5b7b90ae4095540da2cb87193c309e679.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.json index 42215b7f453..60cbce310d9 100644 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-milan07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-milan07 -o sub-milan07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.nii.gz index 48e641dfdef..2cb833a9fce 100644 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36647--3a234385bd445fe2bc03f549f3c4770e1b4a8070cb83f1b78a06608a1d8ae612.nii.gz +/annex/objects/SHA256E-s36918--b9ed145a6d249e36780c3b79ec1d1de052589590c956bb9d806b63eff4c358a7.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.json index 42215b7f453..ee8e5f3e64c 100644 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniPilot1_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniPilot1 -o sub-mniPilot1_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.nii.gz index c70fe1ad5fc..6aad2189d09 100644 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37647--91f99845a30aea4a00e2adec5b7f267176f2dc545e79d1c011b9a5a6e48e054d.nii.gz +/annex/objects/SHA256E-s37044--1ac549bb1718e231868b9bc1c3824a3ddf8b60be54586afc51cb485775fb9aec.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.json index 1cf279b7792..c8895034c88 100644 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS01 -o sub-mniS01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.nii.gz index b3f6f9fd462..55a4bb75e7f 100644 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37248--b596452789f7727a71ce5901c4af2305175809a6154ad926a1c0820fbc320ef5.nii.gz +/annex/objects/SHA256E-s37133--8be4ff7773916d657930ad47efac1ac57876e38c6108c24035a872bbc66419b9.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.json index 1cf279b7792..8ac8978c8e9 100644 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS02 -o sub-mniS02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.nii.gz index e80b9060eac..b06f13da381 100644 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37012--6fc47f3199890ecf3f59865bf1273c8f41815cfaf73e2f9345e21a841f81fbbd.nii.gz +/annex/objects/SHA256E-s36822--c7457f0a9b7a8a7f902fe54dd72337db1b830c9ec03eeb19cb5e612e2c08980b.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.json index 1cf279b7792..b83f504ff72 100644 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS03 -o sub-mniS03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.nii.gz index a18ea4a55d3..3addcb801da 100644 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36698--4742c19bdc52db28d167a7975671d24f7a9a3e735a97bf6a8078a0e47922f726.nii.gz +/annex/objects/SHA256E-s36292--a7136f627cd39d3f7338f2c68482751f9555bba51d36525f355bc285cd24648d.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.json index 173084cb673..f1ea56faf7f 100644 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 12:29:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS04 -o sub-mniS04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.nii.gz index 060054f56e3..5fbfc42b0f1 100644 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s71276--c0ac27c44ded023404231d722a20e8c0ea5ca9a75a020cba13f2de0349c3f90e.nii.gz +/annex/objects/SHA256E-s38121--7bd6e7cd12eb540d90c6b4f6b3de75e740a1e9108ef5f7785fa38890877488d9.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.json index 50aef979bbd..d94f831a201 100644 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:52:26" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS07 -o sub-mniS07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.nii.gz index deb0df54f6d..b5bb4919123 100644 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69609--fec36fe53e4e278e5acc0e71bafbe0bd99ce0c477563319fac3bbc73cc4afb11.nii.gz +/annex/objects/SHA256E-s37490--517cae668d97f9a078f963397bd0399f6cdd1ca1f03dc677a9ad4fe0ae83426e.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.json index a8320b5634a..c720d756424 100644 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS08_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS08 -o sub-mniS08_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.nii.gz index 3c0ec09bc55..534b6638db4 100644 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37040--e457251bf4515ff89ebe38a88f167faf36508de677946669082f8845630711c5.nii.gz +/annex/objects/SHA256E-s37208--565e5413314fc2cd07038a9bc7fb172e096009397ce20a1978f99296653f1012.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.json index cbc78a4c997..500715898a0 100644 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:02:07" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mniS09_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mniS09 -o sub-mniS09_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.nii.gz index 851e142ffb9..5bda669ce70 100644 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69479--eeadf72fb280ff2aa3b5c651e4eb6ff88b6c3f336ac3dd8b82ce90bd875fbb9d.nii.gz +/annex/objects/SHA256E-s37222--52ba1aaf47e7f952eb2c5b39453a9b9fa65096fec4ade2c013d2e91ce70797e9.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.json index bc34bb16f58..9937c135cf5 100644 --- a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mountSinai02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mountSinai02 -o sub-mountSinai02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.nii.gz index 6e380b1f875..b50e267eaff 100644 --- a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37327--99df47f7f22862dc140a68837e0d796f5b2b93699b4c79c2ab6a54651a148246.nii.gz +/annex/objects/SHA256E-s37118--89abd46cc32e712e001672e8063e6022c84b07de22feaf3e7ec6e5b5ebe982b7.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.json index bc34bb16f58..63fe55f832b 100644 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mountSinai05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mountSinai05 -o sub-mountSinai05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.nii.gz index 638ba8aaa3e..138b766df73 100644 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37028--4097e955d3c39ea7a20dbd61df54508a8539b386d98f28247f49c1b1f638d481.nii.gz +/annex/objects/SHA256E-s37090--8e430e2e60516463e8b58caca94763a23509843b0c48c5081f41ec8bde8c00dd.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.json index aa68b7b9622..357320681ca 100644 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier Morinlupien", - "Date": "2021-06-23 15:56:57" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mountSinai06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mountSinai06 -o sub-mountSinai06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.nii.gz index 7f5ba76b4b7..b036447da25 100644 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69606--eb326ffdd4f158bcdbbe592abfc1fea6a1459eccd108883b5faf76abd2bd3515.nii.gz +/annex/objects/SHA256E-s37551--e5a4186ff1c09185312e3669ad98fdc9c10caf4cf6179f73b087742365cd41af.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.json index bc34bb16f58..1331ffca38b 100644 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mpicbs01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mpicbs01 -o sub-mpicbs01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.nii.gz index 040f36b2d28..f15d6823367 100644 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36361--ba5f893eb64378f6510b9f9ca083dc6f1e75f8e523db1dec4b27a4247cc9c46a.nii.gz +/annex/objects/SHA256E-s36341--5c5cb4d6a6ee4ab5e1d0cdab73a7b7f981f99cb2bae841a5d3ec071959c65b9c.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.json index f266b167c92..bf393f4b3b5 100644 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:00:57" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mpicbs02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mpicbs02 -o sub-mpicbs02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.nii.gz index 7e462dec05d..aeaf46d0852 100644 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69376--18e102742041946bf3b49d5a0b26ef6372950245118c11e2a72969c12dd00754.nii.gz +/annex/objects/SHA256E-s36583--f53aad11f96f95f53c37583a3b224e7c878e71f26190cdc40e6bc73c604af5e9.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.json index 3c7b0322c71..dad5c01348a 100644 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:07:17" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mpicbs03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mpicbs03 -o sub-mpicbs03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.nii.gz index 331b1f0f32b..90f33af005d 100644 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s71583--d228d13e6fb19578228b825268d6e159cef2def3fff4501aa7cf9c1c892c2532.nii.gz +/annex/objects/SHA256E-s38696--902599953774be06e7e64db03a698559d77a79fd093dd918b628edd01ce9b5ab.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.json index 7f44bf538cf..39bdd11a879 100644 --- a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:06:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mpicbs05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mpicbs05 -o sub-mpicbs05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.nii.gz index 3123db7996d..1bdcbed69ed 100644 --- a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69306--5ffa0628398f61fddf558f1a75a7443233f56406c288999eaf4183e9eb1a7f87.nii.gz +/annex/objects/SHA256E-s37465--519a49176b9d749596cbadc9a1ffa4bf48a27a90f0cbf7194d3faeabe7a887c7.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.json index 580c0f0c3c9..f682e35aed3 100644 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mpicbs06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mpicbs06 -o sub-mpicbs06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.nii.gz index eab3311f5c2..17c6c609d5f 100644 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36913--4bd0caaaa54be5dd04948286b0409a6d0e0834109026ae238925866eb7e38e70.nii.gz +/annex/objects/SHA256E-s36805--8dbf7e11de2368b55c3ad59158190d5e53439b08e156d83c121553e3ec6a24aa.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.json index 52ee5776598..1e95c4e726c 100644 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:23:38" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-mpicbs07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-mpicbs07 -o sub-mpicbs07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.nii.gz index f3103ebf04b..f9554c2e609 100644 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69463--62905b36c4db7bbce3bf44bbe7541f81f8f3553fb276aa47988020e8652ba479.nii.gz +/annex/objects/SHA256E-s37778--1022bab8f8cb5f5eb996da48cb5ad50d14cf18de0b53a1fe0c5622c6d2959070.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.json index 4203d4afdd9..9a27bec8003 100644 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:49:16" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nottwil01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nottwil01 -o sub-nottwil01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.nii.gz index 3a974c353a2..b7ca187eaca 100644 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s66131--c5a82713506882d2849cb48b53faef589cbbd67c7c3509f98545f77114c6b249.nii.gz +/annex/objects/SHA256E-s35233--8dfd54f3ef71f7c1ed7d687a7b3bc33bcd197868f7a060eb7a27841524dff94d.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.json index 580c0f0c3c9..faf01f0aa6e 100644 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nottwil02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nottwil02 -o sub-nottwil02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.nii.gz index e31ede0d1f1..c5e6d286a02 100644 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s35402--45da8b91b791073273b9c6781eafb9a1cd06ce3cc9b86e0331988a9bb5c38ad8.nii.gz +/annex/objects/SHA256E-s35351--3060e0dc71356b9c5421a458c6611e6e90a74ccf016431924a5dc591533ce9b2.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.json index 343f0e8f2ab..36a71909d59 100644 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:28:01" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nottwil03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nottwil03 -o sub-nottwil03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.nii.gz index 5745a774e53..2b9a8fa1d5a 100644 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67337--8db45d3994d15c4e862833d641ed01282bd9ceb1e31694af06e1f1bb47c75a75.nii.gz +/annex/objects/SHA256E-s36018--fc2aeacb8c475d16daadbc81df6591aeddbcf75f62354ab7afe94971834bc51a.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.json index 264dd1ec1e5..f273a3ef1a9 100644 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:49:59" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nottwil04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nottwil04 -o sub-nottwil04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.nii.gz index 5e2eae3a3fd..f9294bca219 100644 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s65787--64dda9650ad37f0e11b2fca14075b460892d1e29d6da1d037264d84dc6ccd508.nii.gz +/annex/objects/SHA256E-s35183--a54da36c2ee52aa56e4d235fe03fb2510e3d1172281fd6ed83b5c2040759e331.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.json index f8f8a64c540..49c061b0499 100644 --- a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nottwil05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nottwil05 -o sub-nottwil05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.nii.gz index 92adac6bd6f..64f3653b2b9 100644 --- a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s35075--5232c0a043ebcc7eb93f6655f24133ecd34fff0c8f35af72530d64d90f7feb9a.nii.gz +/annex/objects/SHA256E-s34953--74ad6d14d7777b8b6bd2a47b9f66811f2d9123baa5deb4238239b82e21e22570.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.json index f8f8a64c540..5eb49e5e3ed 100644 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nottwil06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nottwil06 -o sub-nottwil06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.nii.gz index 33242c32910..83d35f6b998 100644 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37317--4776cf74207200389aaf91b202ca9286c0839dcd0bfc4145cc35f2d7cb1a590a.nii.gz +/annex/objects/SHA256E-s37044--ddddf91a31f37b69929014d588f3e2696a549f7991a7f50a1b342d4b0c6ffab2.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.json index 12a6402fe6b..815673aa132 100644 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:22:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nwu02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nwu02 -o sub-nwu02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.nii.gz index 6ad5a0ffcfc..4f51558dbc3 100644 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67775--c40ae390167131f197c566a3eab7fb4b09f11227cd6f4346dd83e5a31867d4d3.nii.gz +/annex/objects/SHA256E-s35832--a4251d1948db3a1d78fac3b13de564c650e51a6f523a343d4b0da087bcd0ac10.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.json index 59192c0bd26..f85dce38618 100644 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:25:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nwu03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nwu03 -o sub-nwu03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.nii.gz index 23c6c5df4e4..d6497811542 100644 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69125--0e648ec95725c8b75b6a4abad1847b77c48d7cc8a67e4ad6d851b9a90f0f1080.nii.gz +/annex/objects/SHA256E-s37182--f77ce33ed1adc43aebb0711ad7d1835252835e30c1769e237891068dd8833c3f.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.json index 0b9e26a2458..57af6731df4 100644 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:40:55" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nwu04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nwu04 -o sub-nwu04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.nii.gz index 6ba4c54d263..5149b087c8c 100644 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70712--033189737282741ffa3812a9b7884f31d0daf3e45b384833827f90788ec52bac.nii.gz +/annex/objects/SHA256E-s37790--9795398ec6353f5313aadb9cb20b6f49105cc488084bb44bf1079a29c27332cb.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.json index 0a545506989..3567063061b 100644 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:26:01" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nwu05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nwu05 -o sub-nwu05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.nii.gz index f630b848717..1d763ca6b8c 100644 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70718--ffe85f9d7c8d86f1ff938c52e8e1a3e995ecc4c8a307237c43c09a93dbb090a2.nii.gz +/annex/objects/SHA256E-s37950--bc50cf52c9dffa43e515dfa4dbcfa19c2e197332b9c7811a672a355f3c1f45e0.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.json index b44ea15798b..09f84824b6e 100644 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:07:04" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-nwu06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-nwu06 -o sub-nwu06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.nii.gz index 1dfb9b803b9..bde97dcfcc3 100644 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67885--f89e6dda1ea83fb319c03e3dc80f04c4718ec085dc25d9ae031022cccf80e6b8.nii.gz +/annex/objects/SHA256E-s36512--dbda65c7ee6883e07937f81afd3fe17139ad4d4c2377c149cd661646f37bcfe2.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.json index ffef96c0f17..e08223843a4 100644 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:45:52" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib01 -o sub-oxfordFmrib01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.nii.gz index e577665aeba..7299cf5927a 100644 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69947--cb63d71c5755461c29e67a63b0de1b29c318d0f65c0eca135974fda80f300e6e.nii.gz +/annex/objects/SHA256E-s37726--979305c3f8d9ffabc0da31f430170f45ad4e836f0532b30bb8ea7657fee9e6a3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.json index ce3f2cea500..81088aaa181 100644 --- a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:43:37" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib02 -o sub-oxfordFmrib02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.nii.gz index c419f192f34..7a58f74ffa7 100644 --- a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70081--d8195d85845ce3b57d0f130b7e5dd4265a8f0b790010f33afbad1355fe9c4db0.nii.gz +/annex/objects/SHA256E-s38174--12112c999d9c60feb9740969a38a11da7dae7da8135cd985fcd17f129b14c32d.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.json index 4e06b10662f..8bd7788ad01 100644 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:48:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib03 -o sub-oxfordFmrib03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.nii.gz index 7b6ed4fe420..ca579bc3910 100644 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68819--4f1535b0eda8cb93cf021fa0613b812525c6d16de2bae435d0b7724fb0480d0d.nii.gz +/annex/objects/SHA256E-s37024--0462b79618a8215031ce10a53b615cee5130c964d4308559ebf53e60a1eae559.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-SC_seg.json index 077c087b5f8..4df03c4042c 100644 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:39:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib05 -o sub-oxfordFmrib05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-SC_seg.nii.gz index 07cc0a140a4..8c3722623f4 100644 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69115--620191ba35f724da8b75f15e12058a2226a5a3947fba377acfb28178d219bd4e.nii.gz +/annex/objects/SHA256E-s37355--6beea061d99ab53c3391d7bee673bc519d5153a9ba23efcd9817c3da65e63d4a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.json index 181db7e3fb8..bcc53aa2c97 100644 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:40:30" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib06 -o sub-oxfordFmrib06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.nii.gz index 9e678752484..10e6943b671 100644 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68900--faf61b14eb27cd5b4b630a40b52148a9d52f42df25c5b8b23be07f7972f12724.nii.gz +/annex/objects/SHA256E-s37449--d7919923c3a7081d430dff322fd192b2d105baee8b19e7279cc5aa107da8cdfa.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.json index 30651ab3005..8491b9122f1 100644 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib07 -o sub-oxfordFmrib07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.nii.gz index bbb3e39d90e..14da3c8b617 100644 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s38415--07632c0637f21bdfb1945abd2efcf7ecacc18671097cb7539781d7bf82ea1be6.nii.gz +/annex/objects/SHA256E-s38320--0ae87425041acda381f7a694594b307e9ce855204a52676cb06c2fb5c66926ab.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.json index 496699c98a6..ec8b48ef394 100644 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:08:32" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordFmrib10_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordFmrib10 -o sub-oxfordFmrib10_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.nii.gz index c162e81ff58..25f4eddcaf4 100644 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68512--e71e6874352ffe124022bf01a376a4f5a866f8ef0a9c6e20d0b8704a95cc1012.nii.gz +/annex/objects/SHA256E-s36674--88cb067ffabe09127fca42242f70f8b7509344ef53acc87d4731d8ebad8ecd4c.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.json index d47003c4b19..8b9da48369e 100644 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordOhba01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordOhba01 -o sub-oxfordOhba01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.nii.gz index 2d5c42564bc..134e79e33e2 100644 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36910--275cce23027cae06886fabef127e8c3b86e28f543bae7bd4045d01e6aec5a9ba.nii.gz +/annex/objects/SHA256E-s36691--dc7f1506c5602f5385e8a55a3ba9bebe2ae505834aea947efe9575e05f8f9100.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.json index 21de2f5f765..d9584e49e6a 100644 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:09:48" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordOhba02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordOhba02 -o sub-oxfordOhba02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.nii.gz index ef97bc5c684..a0c0c725f71 100644 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70939--e465b041097a79a84f79c7a7de59d661a2b8b9dcc09efed66e457e8b4b915133.nii.gz +/annex/objects/SHA256E-s38082--254dbb92202c5e1ab3c7b350717fe08cc9e6100c28705ea552fd7f67630a9d5d.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.json index d47003c4b19..a476808728f 100644 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordOhba03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordOhba03 -o sub-oxfordOhba03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.nii.gz index 3405689ac8c..1048d498d06 100644 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37556--8134c94cb9dc9fba5c57c7d86ecd47d93dbed2ec42cc34780288ecfbaa2debda.nii.gz +/annex/objects/SHA256E-s37053--708bdad00a950ad49490ced00ad80e4098b6947a7d529859de25356a3a06c5d8.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.json index b801ecd9624..39cfcb8bf4f 100644 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordOhba04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordOhba04 -o sub-oxfordOhba04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.nii.gz index 86e5ecf7097..8b0b3110106 100644 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36683--03b7151f10eb798115db0a642ae052d897cbb007e1788a02c632a8755367466b.nii.gz +/annex/objects/SHA256E-s36621--69dd4de92e32dad8c8164d7192a3e293a5519e35c62423fc867e5f0ae49c6275.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.json index 3e5ad1663e8..8541e26a71a 100644 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:13:00" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-oxfordOhba05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-oxfordOhba05 -o sub-oxfordOhba05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.nii.gz index dd2f78398b6..c2ac799309e 100644 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70511--14d00fea77a137e632a7f69ec2a96b8694d8515e88353340603564efe9cedf59.nii.gz +/annex/objects/SHA256E-s38162--557837b1fe434b46d65a74a4f366f3143beb3aee3fe11b630ed72437556c22f4.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.json index c9f27cba41b..c1002f4a1c4 100644 --- a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:02:30" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-pavia02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-pavia02 -o sub-pavia02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.nii.gz index d7133b62a5d..b434b2600f2 100644 --- a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69188--642d069bc2ec3d8b21c62d83abc08d0b463e3c93e7482ba166b0b36b46670954.nii.gz +/annex/objects/SHA256E-s37051--cb0403f98212af726527d25ead293892787c8bb1c1ec767b1b50c603d4cbe5cb.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.json index 08b8f09efa3..0249c1137fc 100644 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 21:39:49" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-pavia03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-pavia03 -o sub-pavia03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.nii.gz index e15f378191e..dc9aba4b3e8 100644 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69434--14eda8e571981217a382e12eb9752122cff47e24435017f917167895bc632c96.nii.gz +/annex/objects/SHA256E-s37166--3b7088f3b455275edeff4c83b8cad8c95a8abfe916f243e6f44a3721439eb819.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.json index b801ecd9624..25a5fb1d638 100644 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-pavia04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-pavia04 -o sub-pavia04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.nii.gz index 471a8a7103d..2b76d629382 100644 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s35724--8a461e2c08013d293d9208160cc85ab036217de529c18523692a5ebf1b292c47.nii.gz +/annex/objects/SHA256E-s35493--fc11fb3a1980ccbd15de32e27a006be3f087768418859c950d0f70b0c6a5b9d3.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.json index f947a1fed39..13d687f6c2b 100644 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:03:22" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-pavia06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-pavia06 -o sub-pavia06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.nii.gz index 13eeeaf009c..37f64bcd8ef 100644 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70883--cd3cc4707bfdbbb285db29c4d97d84be108b3de94b1f03deffd08121faf9aa13.nii.gz +/annex/objects/SHA256E-s37809--625a45473f7a82d3a579c4e91926e4f38ff2ad188aed09d8f722d19b8bfdfff6.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.json index 1b22277ff9f..36248a3787e 100644 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:46:41" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-perform01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-perform01 -o sub-perform01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.nii.gz index d7193963e34..ff260124e73 100644 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s60819--c93721bd07c4740659237a2ca4cd69d59d9dcbf454d8e44fbac0b447ec4c9cda.nii.gz +/annex/objects/SHA256E-s32724--975b09b06f4ff8913e307d3ac409705ba477e97a8ec5f727627d16515c274d3f.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.json index 222b2a229dd..0c37f25715c 100644 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2022-08-04 15:24:09" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-perform02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-perform02 -o sub-perform02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.nii.gz index cc24150c374..d892a81700e 100644 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s215158--e7cb17f4a254c0334d57ceb908530b3653fc3f20c2a0f2d7aa8ecb1c22dc9954.nii.gz +/annex/objects/SHA256E-s32251--7bf3b2fc9dc2f6e108e97548d7a530a7a481a3286e8696b28b29c393760d700a.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-SC_seg.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-SC_seg.json index a1251339052..a04aecb4144 100644 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:02:17" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-queensland03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-queensland03 -o sub-queensland03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-SC_seg.nii.gz index cf92df6e8e7..5eab3f2d903 100644 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70832--42558db2612fef758ef3cefcad44424dda628eadfb3e0ccf222f3446ada0e6a1.nii.gz +/annex/objects/SHA256E-s38534--a1b44aae33095391b322b421ba852bddfa6c1004e62cac93049b8fa03b86f520.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-SC_seg.json index a1273b973a2..197886ffd57 100644 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:25:39" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-queensland05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-queensland05 -o sub-queensland05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-SC_seg.nii.gz index 7f1798f8918..df6b7c86f64 100644 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69826--7706b36f21a363671f30114666bdfb29ce83f862d255b2aaa2d34cfce57aba4a.nii.gz +/annex/objects/SHA256E-s37608--4af65faf1dc2ae459b7a30fc659c37797e946fd7f4dc85df3cef5f79a3a240cb.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-SC_seg.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-SC_seg.json index 26f7309fdca..630df4a73e6 100644 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-strasbourg01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-strasbourg01 -o sub-strasbourg01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-SC_seg.nii.gz index eb9eac5bce1..b0dc73dd723 100644 --- a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37851--900b13957626f59d3f9d40a9b0fadcf3409dee5d6e020e068bccce122015f77b.nii.gz +/annex/objects/SHA256E-s37460--cf0f158813656d61cc5a3075e6162b50f815cc1fef3694b855024a555606d43a.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-SC_seg.json index 4cb12fc0aa7..a51f1baf13a 100644 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:23:42" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-strasbourg04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-strasbourg04 -o sub-strasbourg04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-SC_seg.nii.gz index 2ac3b473cca..9e7dccaaf4d 100644 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68574--3294997d0130473660396d83cd8fb009763e5d22cb618bf32002180932d98732.nii.gz +/annex/objects/SHA256E-s36422--e0d13c229742df0fb39cd83c3ae9d3ceddcaf49aa02cf0cd59aaeab2f7c2672f.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.json index befb680183c..6555f9e3803 100644 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Paul Bautin", - "Date": "2020-07-29 15:47:58" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-strasbourg05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-strasbourg05 -o sub-strasbourg05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.nii.gz index bdf4757b51b..b44786f97e9 100644 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37407--5c14337e774e6dc0abd00b65e4ab15b31ef6096bec69a96a13f45ece240a989a.nii.gz +/annex/objects/SHA256E-s37315--3ce98bfa6f616fb47de3b2d0edeb3c93056b529c45069c6a77777455ca642a4b.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-SC_seg.json index d785bd13bee..0caf6b5a2e8 100644 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Paul Bautin", - "Date": "2020-07-29 15:13:23" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-tokyo750w06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-tokyo750w06 -o sub-tokyo750w06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-SC_seg.nii.gz index b7e7c0bed75..97f5c33c792 100644 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s32862--50d6770ea8cd0d6bd96a906ab967b11e2aa9eefe06bbdcddeea60cc9c488bf4a.nii.gz +/annex/objects/SHA256E-s32700--e2b3dec75922650982afda03f250c8f4271d0cb91a7fc5d4742e2c0d25e9f0b5.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.json index 684265ae34e..f5ecd808387 100644 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:12:10" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-tokyo750w07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-tokyo750w07 -o sub-tokyo750w07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.nii.gz index 4e7b1b5c31e..eaf9970304d 100644 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s61040--3d5dae8d65c47b6e0f7ee98996ee5e694ce7ad9eccfcc82a9d88c12f80fbf8ba.nii.gz +/annex/objects/SHA256E-s33163--fd45e364c6e9ba9a4dfd7d976ce3b382e17215e7d8dffd32f394ddc7f441fc4b.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.json index 7eeb634f472..1258fca497c 100644 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-tokyoIngenia06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-tokyoIngenia06 -o sub-tokyoIngenia06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.nii.gz index 13f8b074d9c..01ee1885025 100644 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36232--810e385fc08308b6daa5fe2c65a1db375bc7c6ea8fb35dbeea3b9934f287f7bb.nii.gz +/annex/objects/SHA256E-s36013--64dc58e6a4848cd49e7956cfd9ebcd3f6be6f912d3944ec869818e08caebe1d4.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.json index b6252290724..0c151e8237d 100644 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-tokyoIngenia07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-tokyoIngenia07 -o sub-tokyoIngenia07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.nii.gz index ce1e53f7aa7..e4216798d1e 100644 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36158--724cdc6b30c57bef34e53ee4fdc357d2e197d21df48235c01f9ca8121d83e996.nii.gz +/annex/objects/SHA256E-s35522--f9684df5a24d3ad21b327fa1b136fde5e4062a3a730e4a49c035656f2795250d.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.json index b6252290724..e77ba6d3154 100644 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-tokyoSkyra06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-tokyoSkyra06 -o sub-tokyoSkyra06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.nii.gz index 35d49667272..7276c719d52 100644 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37089--15958013e16b59fb8cad2f6f129c5ffc67f15a14fc334a2e3fd5c9e5af3c34c6.nii.gz +/annex/objects/SHA256E-s36439--a83758d5402f4148bc39acc62f331804f9bd389905cef0988dfff2d15b1095fb.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.json index b6252290724..7c979889924 100644 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-tokyoSkyra07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-tokyoSkyra07 -o sub-tokyoSkyra07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.nii.gz index 7e7bb0df9bc..5be4d967897 100644 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36869--b662765be799b9f7170239a6bf5d30499dedb54b36aaa2d9a0dc06f3b2726d6f.nii.gz +/annex/objects/SHA256E-s36685--4665ca57f615fe5cce8aa65289e7f41a2c471ff92c339c21b1f87bc937bc8760.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.json index b6252290724..71452c8b778 100644 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ubc01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ubc01 -o sub-ubc01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.nii.gz index 337a1f78a7f..aff68e91583 100644 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s34918--7097236f890a165f98e86c7c78c752f07a21c219fd633ebc3a905199678fb855.nii.gz +/annex/objects/SHA256E-s34500--96019c2b85d06f768d7c76251e27539112f2be3f64e0e2a5b8066b44c0b7c05c.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.json index a4013c005c9..4a3dbff2916 100644 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 09:35:17" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ubc02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ubc02 -o sub-ubc02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.nii.gz index a3b37c21a69..f163cc5df73 100644 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s66275--4534664a29914a0d7fa732f374dada04a7894037da489d3b6165d9f1d8d6aa37.nii.gz +/annex/objects/SHA256E-s36538--47f2df4e077869b5ebcce242953218a59303560e3ef58643da7137b819bbd392.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.json index 0684fbfb31d..d86c4e5e9c7 100644 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:26:36" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ubc03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ubc03 -o sub-ubc03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.nii.gz index 51b1a654061..aee4cb22d8a 100644 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67325--20b8ac94295619924d67728d4ebea3b507e1b89371b2992181e5db843eee3000.nii.gz +/annex/objects/SHA256E-s36119--166a193d43c39fa6ae0c79699eca0af1d3621fdf65059e95189495870884df21.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.json index c45b052c72d..d635140cc28 100644 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:08:00" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ubc04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ubc04 -o sub-ubc04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.nii.gz index f8ee7ffc191..597ef5cda10 100644 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67052--b6e36bc33518b7b400443497c676a232b1a44798ca0a315d62426bcf0a2c9ec0.nii.gz +/annex/objects/SHA256E-s36197--100bc8c5e70994709497a4aad70ad12a8a79e6c644cb1f34ea530d8cd8175920.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.json index 162c1152dd6..1f564a59606 100644 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 09:38:56" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ubc05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ubc05 -o sub-ubc05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.nii.gz index 815e4810063..dd175955288 100644 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68204--67befa25605bfc685aa82319342212f0c8186c7010d01b5fc3faa5df0fb09410.nii.gz +/annex/objects/SHA256E-s36688--50bb2e675fdc8ee2e71215841fae4e69767f5c9bdb3cf6ce064fc387339d5401.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.json index cd7d46b59e0..f3e9bd1ac88 100644 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:23:56" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ubc06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ubc06 -o sub-ubc06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.nii.gz index ca00bc45c9e..a2e74d1ba05 100644 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s66754--ba7a776bd1a27cff278e1e7f5ce1ace23719ba742fc03f4b3b65062d9719e76a.nii.gz +/annex/objects/SHA256E-s36041--8076babbcb3516cc3541632553632c88c555d0df5bccbedd895d13da41515c61.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.json index 52a394cc537..8e894004455 100644 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:23:22" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucdavis01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucdavis01 -o sub-ucdavis01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.nii.gz index 561b01d720c..c508b340505 100644 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s70081--6c7102b8273a2dffa1d068a5926ae071e5e5d799000f3b97459fb451fef203e5.nii.gz +/annex/objects/SHA256E-s37577--b3527349498355834b1910c347737d03960e86e89e6e565a816090f0520bc49d.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.json index 18c7600b6b1..8e4987a9f76 100644 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:13:19" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucdavis03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucdavis03 -o sub-ucdavis03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.nii.gz index 8ee2cbbb8de..861c3b19b70 100644 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s71724--cfae67f5cfef68267930041984d6605d0ef47ad1efb2674ba556f346be5d60ca.nii.gz +/annex/objects/SHA256E-s38886--d00b799ab1885eb4d2808667cc362af48a97e74a3eb86f9c13b335b1e31443bd.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.json index 75aecd7f97f..73977484c23 100644 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:46:11" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucdavis04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucdavis04 -o sub-ucdavis04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.nii.gz index ce889537265..0a418353e96 100644 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67996--9babc5af7092ed83a2e51bab65e0baa97869e170deccd443bd3516aa8239e2c4.nii.gz +/annex/objects/SHA256E-s36504--5aec794e27b744e9040276f6d66ccd215e71ab2ba83a087eff26871947428603.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.json index 09acc671197..4ff76c32998 100644 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:57:47" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucdavis06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucdavis06 -o sub-ucdavis06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.nii.gz index a298028bd1b..9e847d5bda3 100644 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69403--465f94fa032cc9f39184111466f27ab18f075ac4ce119b0a5f34358a003430f0.nii.gz +/annex/objects/SHA256E-s37405--97b790d463f12db38351b0f4979ae645fefab23e43c3ef40d8358a690a636723.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.json index a00f1eca1be..3810146901f 100644 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:30:48" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucdavis07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucdavis07 -o sub-ucdavis07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.nii.gz index d2341bc3fae..6278e1eba5e 100644 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69431--f9cb108958ff1b848502094bbb0db01820f846c32b3aaa632c32e24f30a21732.nii.gz +/annex/objects/SHA256E-s37543--f3719f042a25384254516f7f8253384cff088a37328f0189c3bc334c8c2be805.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.json index 93efc4b80a6..2ec105a3326 100644 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucl01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucl01 -o sub-ucl01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.nii.gz index 970a73aa7fc..1ef1337e054 100644 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36531--6fb8dec80c84d0233f0d96243bb719c69f178c3e26ed9d5520db1c5b00f4bb55.nii.gz +/annex/objects/SHA256E-s36177--f5aee80d0d77a0af8d5d06197872cc2a61648dd559625f4d9340508ae172276f.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.json index 93efc4b80a6..98262c88724 100644 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucl02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucl02 -o sub-ucl02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.nii.gz index 4a7b45880d6..c5e9081d085 100644 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s37568--fe38918ebb96737e1c9e9b7144ead0a727174e48f9d6e1523e6844497dee8a96.nii.gz +/annex/objects/SHA256E-s37098--6f0fc96e26d643d314fe814cc6c34e0deb3f8c526b5950223028e5ef50bc9e02.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.json index 79f702e1c26..d592a28b564 100644 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:01:08" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucl03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucl03 -o sub-ucl03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.nii.gz index c57f2d88915..d2746f3bec8 100644 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s67253--427ffc8d55b260860a34065b1b2279d00e9ad7d484b0681f5cba6476efe82b94.nii.gz +/annex/objects/SHA256E-s36622--f272908f46c38b88d78a68947334a4c39b84b9f5208ea8c3af91899d6f54afa0.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.json index abe27a9bf09..a2666d82f4b 100644 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:23:55" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-ucl06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-ucl06 -o sub-ucl06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.nii.gz index fdcbc0db9d7..900d81524ff 100644 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s66354--008c956d97e1fe24b26e6f738b836ad269634acd601f407be3ffbc17db6f95ce.nii.gz +/annex/objects/SHA256E-s35722--46bc7c2fe1bec7cfe21b87c46ecb6687536746088c79132bf965bad5703de1fb.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.json index 4da5ff90c5f..01fcba622d4 100644 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:10:20" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-unf03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-unf03 -o sub-unf03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.nii.gz index 21a79adc2a0..c67fbdaacb2 100644 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68827--d05d135c7def7857635dcce5fcca012291313229801cdf30ff8be1827bd42b4d.nii.gz +/annex/objects/SHA256E-s36918--9d4967bc2da074f885fd400cd7d6357cc5c2a576b78ec50eb21444ac77f07952.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.json b/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.json index b1396c93dd7..0b57fc8f995 100644 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-unf04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-unf04 -o sub-unf04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.nii.gz index 617f33db523..0cf257a3beb 100644 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s38378--034a7b38790845bc45a326c6048723c7c7fe13d873aa242a0f7bf8d179a59cf4.nii.gz +/annex/objects/SHA256E-s38133--1d40ae73cc2ed0639560836939b94a82fda27c7403fa9d7f31720ded28e68ca5.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.json b/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.json index b1396c93dd7..c923d34bb95 100644 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-unf05_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-unf05 -o sub-unf05_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.nii.gz index 226a0f8783c..30c16a6b75c 100644 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36604--fa3a9c79fa6fc057f482282752689ca6199499f39c443fc0bb2334d32f784a70.nii.gz +/annex/objects/SHA256E-s36368--e3239ae4d8903b897120410dbedeec005be8fe5dcc83888be4726028066b50c5.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.json b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.json index 1ea26d6adc7..8b7b59819b8 100644 --- a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:13:18" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-unf06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-unf06 -o sub-unf06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.nii.gz index 937b8cd6b02..be066ab79e0 100644 --- a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69657--34f87c15cc3c60c9ed4a4ac00965aff8b7936f3a8558ed7635c4e0be849121aa.nii.gz +/annex/objects/SHA256E-s37211--ae14c8a339ea429be32b23eb6fb2da8fa803d6e644bbfc6f96aa77ac2f3daafd.nii.gz diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.json index f6ebe88679a..d77591fda4e 100644 --- a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:14:35" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-unf07_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-unf07 -o sub-unf07_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.nii.gz index 31e570d9b13..f7633bf2978 100644 --- a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69982--f94d1f1751365c88a1b8985bb5afc4601be0abeec4e3c757c2b42ab57a46950a.nii.gz +/annex/objects/SHA256E-s37926--654a4f96102dbb450ddd7b6dc57361fd885af13d9a29997bc4c041f208486d85.nii.gz diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.json index 17c3e24ea1b..38b424ab99f 100644 --- a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:17:51" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-vallHebron01_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-vallHebron01 -o sub-vallHebron01_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.nii.gz index 528d9063003..abe7025590d 100644 --- a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s69805--f3a7c22ada9f873fe952197303d53926955a39af30b5a6c98804730e398a0832.nii.gz +/annex/objects/SHA256E-s37057--befeb40bb19147d6269924a522db37233dadbd7aeba952705bbb5d5a094b637f.nii.gz diff --git a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.json b/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.json index 5d9ca78a69c..bb594c31f75 100644 --- a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-25 12:24:37" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-vallHebron02_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-vallHebron02 -o sub-vallHebron02_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.nii.gz index 2750c7157e0..49b744c6157 100644 --- a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68753--0a5cbee4795484a84c90436e98fcb9432fbe3460b48c6cbbbbd3d8bc8a9fe6cf.nii.gz +/annex/objects/SHA256E-s36693--b360c4a67255ba89b5a17a6f860d2824d1bcafc7ff4d3a559602af68d8ce6da1.nii.gz diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.json b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.json index b1396c93dd7..3836cd17080 100644 --- a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - "Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-vallHebron03_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-vallHebron03 -o sub-vallHebron03_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.nii.gz index 362c0a9276b..c62aeedc4b8 100644 --- a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36585--e38a1e558652c8c3cd0deae8dc593823ae8410d0fb36362b08bd21538caf84fd.nii.gz +/annex/objects/SHA256E-s36273--361c44ac3a3f3f6d8715a6066e51d9736bcf110ff0fc5de43671d2ead7029d99.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_label-SC_seg.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_label-SC_seg.json index 0fd9b21b584..c47ce3bae36 100644 --- a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-07-08 12:24:06" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-vallHebron06_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-vallHebron06 -o sub-vallHebron06_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2w_label-SC_seg.nii.gz index 550ce969be3..8c5be8e95a0 100644 --- a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s68384--77af3ffa50754ff8f2cdc14e28296d4b7c08d09a7cbf6a4a4669d619e9e3d2d1.nii.gz +/annex/objects/SHA256E-s37101--5dc02733e945e6630a554dfdf80578ad64d6b7e89191b22dd0e778d78723cddf.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-SC_seg.json index 9353ff24cbf..c7132b14a22 100644 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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"Name": "sct_deepseg_sc", - "Version": "SCT v6.2" - }, - { - "Name": "Manual", - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" + "Name": "spinalcordtoolbox: sct_deepseg -i sub-vuiisIngenia04_T2w.nii.gz -task seg_sc_contrast_agnostic -largest 1 -qc qc -qc-subject sub-vuiisIngenia04 -o sub-vuiisIngenia04_T2w_label-SC_seg.nii.gz", + "Version": "git-master-310834f50bfc9e3f9c68d696ada10a2223a882de*", + "CodeURL": "https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/310834f50bfc9e3f9c68d696ada10a2223a882de/spinalcordtoolbox/scripts/sct_deepseg.py", + "ModelURL": "https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/releases/download/v3.1/model_contrast_agnostic_20250123.zip" } ] } \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-SC_seg.nii.gz index bebba6ef5d5..daaef671803 100644 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-SC_seg.nii.gz +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-SC_seg.nii.gz @@ -1 +1 @@ -/annex/objects/SHA256E-s36285--13cbfb70762afdc2725433dc0bd6921122690483c43d5edd8d80656766fdf503.nii.gz +/annex/objects/SHA256E-s36113--f60f0f0280b8a1a42a5c155097b0b002df19f0d9bbed982d9c68de83cf2cc0c6.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-SC_seg.json index 07cb2f827d8..dde8de8e6db 100644 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-SC_seg.json +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-SC_seg.json @@ -2,13 +2,10 @@ "SpatialReference": "orig", "GeneratedBy": [ { - 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