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.ipynb_checkpoints
20150313_LSU_Oil_Spill_IndexID_Comparisons.ipynb
20150316_LSU_OilSpill_Adapter_ID.ipynb
20150317_LSU_OilSpill_EpinextAdaptor1_ID.ipynb
20150408_Install_Bismark_bisulfite_mapper.ipynb
20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb
20150414_C_virginica_LSU_Oil_Spill_Trimmomatic_FASTQC.ipynb
20150429_Gigas_larvae_OA_BLASTn.ipynb
20150501_Cgigas_larvae_OA_BLASTn_nt.ipynb
20150506_Cgigas_larvae_OA_trimmomatic_FASTQC.ipynb
20150521_Cgigas_larvae_OA_Trimmomatic_FASTQC.ipynb
20160114_wasted_space_synologies.ipynb
20160126_Olurida_BGI_data_handling.ipynb
20160126_Pgenerosa_BGI_data_handling.ipynb
20160203_Olurida_Zymo_Data_Handling.ipynb
20160308_find_rename_2bRAD_undetermined_fastqs.ipynb
20160314_Olurida_GBS_data_management.ipynb
20160406_Oly_GBS_STACKS.ipynb
20160406_STACKS_install.ipynb
20160411_Concatenate_Oly_MBDseq.ipynb
20160418_Oly_GBS_PE-Pyrad_populations.ipynb
20160418_pyrad_oly_PE-GBS.ipynb
20160427_Oly_GBS_data_management.ipynb
20160427_speed_comparison.ipynb
20160428_Oly_GBS_STACKS.ipynb
20160502_Oly_GBS_barcode_repair.ipynb
20160516_Oly_Small_Insert_Library_Genome_Read_Counts.ipynb
20160523_Oly_GBS_Stacks.ipynb
20160525_pyrad_oly_gbs_bgi.ipynb
20160609_pyrad_oly_gbs_bgi.ipynb
20160714_EC2_Oly_GBS_stacks_analysis.ipynb
20160715_ec2_oly_gbs_pyrad.ipynb
20160816_oly_gbs_fst_calcs.ipynb
20161025_Pgenerosa_Small_Library_Genome_Read_Counts.ipynb
20161117_docker_oly_genome_fastq_corruption.ipynb
20161117_docker_oly_vcf_analysis.ipynb
20161129_docker_R_magics_failure.ipynb
20161206_docker_BGI_genome_downloads.ipynb
20161214_docker_BGI_data_integrity_check.ipynb
20161214_docker_notebook_trimming.ipynb
20161229_docker_genewiz_geoduck_RRBS_data.ipynb
20161230_docker_geoduck_RRBS_md5_checks.ipynb
20170104_docker_oly_BGI_genome_corruption_solved.ipynb
20170227_docker_jay_ngs_data_retrieval.ipynb
20170301_docker_fastqc_nondemultiplexed_bgi_oly_gbs.ipynb
20170306_docker_fastqc_demultiplexed_bgi_oly_gbs.ipynb
20170314_docker_Oly_BGI_GBS_demultiplexing_reproducibility.ipynb
20170320_docker_Oly_BGI_GBS_demultiplexing_reproducibility.ipynb
20170622_oly_pacbio_data_management.ipynb
20170907_docker_pacbio_oly_minimap2.ipynb
20170918_docker_pacbio_oly_miniasm0.2.ipynb
20170918_docker_pacbio_oly_racon0.5.0.ipynb
20171003_docker_oly_assembly_comparisons.ipynb
20171004_docker_oly_redundans.ipynb
20171005_docker_oly_redundans.ipynb
20171018_docker_oly_canu.ipynb
20171023_docker_oly_pacbio_canu_comparisons.ipynb
20171023_docker_oly_redundans.ipynb
20171023_restore_scaphapoda_data.ipynb
20171113_emu_pbjelly_22mer_plat.ipynb
20171114_emu_pbjelly_BGI_scaffold.ipynb
20171114_swoose_oly_assembly_comparisons_quast.ipynb
20171130_emu_pbjelly.ipynb
20180103_emu_pbjelly.ipynb
20180116_swoose_oly_assembly_comparisons_quast.ipynb
20180125_roadrunner_trimming_geoduck_novaseq.ipynb
20180205_roadrunner_meraculous_geoduck_novaseq.ipynb
20180503_emu_oly_methylation_mapping.ipynb
20180508_roadrunner_geoduck_bowtie2_genome_mapping.ipynb
20180514_roadrunner_geoduck_RRBS_trimming.ipynb
20180516_roadrunner_geoduck_EPI_fastqc.ipynb
20180516_roadrunner_geoduck_RRBS_trimming.ipynb
20180523_roadrunner_oly_TEs_repeatmasker.ipynb
20180529_roadrunner_virginica_TEs_repeatmasker.ipynb
20180530_emu_oly_methylation_mapping_deduplication.ipynb
InstallingBLAST.ipynb
PE-GBS_empirical.ipynb
PhageNGS.ipynb
PhageNGS_ID.ipynb
README.md
template_linux.ipynb

README.md

Jupyter Notebooks

These are Jupyter Notebooks run by Sam White.

Notebooks are organized by date (YYYYMMDD). Date can be used to reference corresponding laboratory notebook entry in Sam's Notebook

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