GitHub - sr320/ipython_nb: Lab Notebook

#My Lab Notebook powered by IPython

Since June 2013 I have been using IPython as my lab notebook.

I have created a forward facing interface that captures my research activity including notebooks rendered with nbviewer at http://sr320.tumblr.com

Browse all ipynb files via nbviewer at http://nbviewer.ipython.org/github/sr320/ipython_nb/tree/master/

###Before IPython? Between 2010 - 2013 my notebook platform of choice was Evernote. You can access the notebook ..

hosted on Evernote
archived online in plain text
download ZIP archive of the .enex file (1.32GB)

###More -Roberts Lab Website
-Roberts Lab Wiki
-way too much

Type	Name	Latest commit message	Commit time
	Failed to load latest commit information.
	.ipynb_checkpoints
	examples/raw.githubusercontent.com/OxanaSachenkova/hclust-python/master/data
	fish546
	img
	tools
	.gitignore
	BSMAP2MK_workflow.ipynb
	BSMAP2view_larvae.ipynb
	BSMAP2view_larvae_c.ipynb
	BiGill_CpG_Ensembl.ipynb
	BiGill_Gene_Methylation.ipynb
	BiGill_RNAseq.ipynb
	BiGill_Tran_Elements.ipynb
	BiGill_array.ipynb
	BiGill_bsmap_genometest.ipynb
	BiGo - methratio error.ipynb
	BiGo_GFF_dev.ipynb
	BiGo_Larvae_QCC.ipynb
	BiGo_RNAseq.ipynb
	BiGo_SpermVSperm.ipynb
	BiGo_larvae.ipynb
	BiGo_larvae_2.ipynb
	BiGo_larvae_3.ipynb
	BiGo_larvae_manuscript3.ipynb
	BiGo_larvae_manuscript4.ipynb
	BiGo_larvae_manuscript_2.ipynb
	BiGo_larvae_methylkit.ipynb
	BiGo_methratio.ipynb
	BiGo_methratio_2.ipynb
	BiGo_methratio_mito.ipynb
	BlackAb_Annot.ipynb
	CC_ampk.ipynb
	CpG_ratio.ipynb
	CpG_ratio_graph.ipynb
	ETS_ipig.ipynb
	ETS_samifier.ipynb
	ETS_samifier_2.ipynb
	EY_methratio.ipynb
	Gene Specific Methylation.ipynb
	Geoduck_hunt.ipynb
	HIF_clup.ipynb
	HS_array.ipynb
	HS_array_copy.ipynb
	HS_array_ind.ipynb
	LT_C1q.ipynb
	MGarray_blast.ipynb
	NGSplot.ipynb
	OA_MS_data_check.ipynb
	OlyO_Chi_Exp.ipynb
	OlyO_GonadExp.ipynb
	OlyO_PacBio.ipynb
	OlyO_transcriptome.ipynb
	OsHV_host.ipynb
	PAG_2014.ipynb
	README.md
	README_old.md
	Roberts_cv.ipynb
	Ruphi_OA_RNAseq.ipynb
	SS_datacheck.ipynb
	TJGR_CpG_binding.ipynb
	TJGR_CpG_islands.ipynb
	TJGR_Ensembl.ipynb
	TJGR_Methylation_GenomeSnapshot.ipynb
	TJGR_Mgo_Expression.ipynb
	TJGR_OysterGenome_IGV.ipynb
	TJGR_ProteinAnnot.ipynb
	TJGR_pearl.ipynb
	Trait_Oo_exp.ipynb
	UW_SoftwareBootcamp.ipynb
	YE_DMR.ipynb
	YE_larvae_difftrack.ipynb
	gen_workflows.ipynb
	lft_v05_fasta2goslim.ipynb
	meadow_log.ipynb
	qDOD_RNAseq2.ipynb
	snippets.md
	usearch.ipynb

sr320/ipython_nb

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README.md