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Influence of 17α-ethinylestradiol on DNA Methylation in Oysters

This repository includes a scientific report on an experiment designed to examine the impact of 17α-ethinylestradiol (a main component of birth control pills) on DNA methylation.


Files and Directories

  • - Scientific manuscript. format = markdown
  • Gavery-Roberts-EE2.pdf - Scientific manuscript. format = PDF
  • - Table of differentially methylated regions and annotations.
  • tracks/oyster-EE2-DMR.gff - Generic Feature Format file with location of DMRs and hypo / hyper annotation.
  • tracks/2013.11.21.A01_smoothed.wig - normalized and smoothed feature track (input versus input).
  • tracks/2013.11.21.A02_smoothed.wig - normalized and smoothed feature track (EE2 vs control).
  • tracks/2013.11.21.A03_smoothed.wig - normalized and smoothed feature track (EE2 vs control - dye swap).
  • tracks/OID40453_probe_locations - location of probes from array across the genome.
  • tracks/oyster-EE2-DMR.gff - Differentially methylated features.
  • img/ - directory containing manuscript figures and table (image).
  • misc/ - directory with RPubs backup, R code
  • array-raw/ directory containing raw intensity files.
  • array-description/ directory with details of array design, contains with file previews.

This work was supported in part by the National Science Foundation (NSF) under Grant Number 1158119 awarded to SR Roberts.

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