Join GitHub today
GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together.Sign up
This wiki serves as the primary means for documentation for project qdod: querying disparate oyster datasets.
In brief, data in the form of delimited text files is aggregated into SQLShare where they can be easily queried. The simplest way to start exploring the uses for this system is to interact with SQLShare using the simple web interface. All you need to get started is a Google account. Please see this page for a beginner's guide to SQLshare.
There is a python client for advanced users.
Below is schematic representation of the different types of datasets.
Reference Genome Sequence files are described on this page.
Currently the documentation is focused on 1) describing current datasets and 2) providing workflow tutorials.
A. Raw Data
B. Datasets in SQLShare
D. Genome Browser Feature Tracks
Please use GitHub's Issue feature to ask question, report problems, or suggest features.