Repository for seminar given at the Duke Marine Lab:
See Lab Website for more info: https://faculty.washington.edu/sr320/
- Lab Notebooks
- Lab Handbook
- Course: Epigenetic Phenomena Connecting Climate Change and Coastal Marine Species
Bogan, S. N., Johns, J., Griffiths, J. S., Davenport, D., Smith, S. J., Schaal, S. M., Downey-Wall, A., Lou, R. N., Lotterhos, K., Guidry, M. E., Rivera, H. E., McGirr, J. A., Puritz, J. B., Roberts, S. B., & Silliman, K. (2023). A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io. Methods in Ecology and Evolution, 00, 1–8. https://doi.org/10.1111/2041-210X.14219
Katherine Silliman and others, Epigenetic and Genetic Population Structure is Coupled in a Marine Invertebrate, Genome Biology and Evolution, Volume 15, Issue 2, February 2023, evad013, https://doi.org/10.1093/gbe/evad013
Gurr, S. J., Wanamaker , S. A., Vadopalas, B., Roberts, S. B., & Putnam, H. M. (2022). Acclimatory gene expression of primed clams enhances robustness to elevated pCO2. Molecular Ecology, 31, 5005– 5023. https://doi.org/10.1111/mec.16644
Venkataraman, Y.R., White, S.J. & Roberts, S.B. Differential DNA methylation in Pacific oyster reproductive tissue in response to ocean acidification. BMC Genomics 23, 556 (2022). https://doi.org/10.1186/s12864-022-08781-5
Dynamic DNA methylation contributes to carryover effects and beneficial acclimatization in geoduck clams Hollie M. Putnam, Shelly A. Wanamaker , Samuel J. White, Laura H. Spencer, Brent Vadopalas, Aparna Natarajan, Jonathan Hetzel, Erich Jaeger, Jonathan Soohoo, Cristian Gallardo-Escárate, Frederick W. Goetz, Steven B. Roberts bioRxiv 2022.06.24.497506; doi: https://doi.org/10.1101/2022.06.24.497506
Dang, X., Lim, Y.-K., Li, Y., Roberts, S. B., Li, L., & Thiyagarajan, V. (2023). Epigenetic-associated phenotypic plasticity of the ocean acidification-acclimated edible oyster in the mariculture environment. Molecular Ecology, 32, 412– 427. https://doi.org/10.1111/mec.16751
Samuel J. Gurr, Shelly A. Wanamaker, Brent Vadopalas, Steven B. Roberts, Hollie M. Putnam; Repeat exposure to hypercapnic seawater modifies growth and oxidative status in a tolerant burrowing clam. J Exp Biol 1 July 2021; 224 (13): jeb233932. doi: https://doi.org/10.1242/jeb.233932
Wanamaker , S. A., Venkataraman, Y. R., Gavery, M. R., Roberts, S. B., Bhattacharya, D., Downey-Wall, A., Eirin-Lopez, J. M., Johnson, K. M., Lotterhos, K. E., Puritz, J. B., & Putnam, H. M. (2022). Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Molecular Ecology Resources, 22, 1247– 1261. https://doi.org/10.1111/1755-0998.13542
Spencer, LH, Venkataraman, YR, Crim R, Ryan S, Horwith MJ, and Roberts SB (2020) Carryover effects of temperature and pCO2 across multiple Olympia oyster populations. Ecological Applications 00( 00):e02060. doi:10.1002/eap.2060
Gavery MR, Roberts SB. (2017) Epigenetic considerations in aquaculture PeerJ 5:e4147 doi: 10.7717/peerj.4147
Dimond JL and Roberts SB (2016), Germline DNA methylation in reef corals: patterns and potential roles in response to environmental change Molecular Ecology doi:10.1111/mec.13414
Roberts SB and Gavery MR (2012) Is there a relationship between DNA methylation and phenotypic plasticity in invertebrates? Frontiers in Physiology 2:116. doi:10.3389/fphys.2011.00116
George, M. N., Cattau, O., Middleton, M. A., Lawson, D., Vadopalas, B., Gavery, M., & Roberts, S. B. (2023). Triploid Pacific oysters exhibit stress response dysregulation and elevated mortality following heatwaves. Global Change Biology, 00, 1–19. https://doi.org/10.1111/gcb.16880
Timmins-Schiffman, E., White, S.J., Thompson, R.E. et al. Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery. Environmental Microbiome 16, 7 (2021). https://doi.org/10.1186/s40793-021-00376-z
Heare JE, White SJ, Vadopalas B, Roberts SB. (2018) Differential response to stress in Ostrea lurida as measured by gene expression PeerJ 6:e4261. doi: 10.7717/peerj.4261