From b2bdf7c80e64c7c9174e2d84f07412bdb8729f1b Mon Sep 17 00:00:00 2001
From: Simon Sadedin <ssadedin@gmail.com>
Date: Tue, 26 Aug 2014 17:26:17 +1000
Subject: [PATCH] Fix chromsome splitting regression causing test failures

---
 src/main/groovy/bpipe/PipelineCategory.groovy | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/groovy/bpipe/PipelineCategory.groovy b/src/main/groovy/bpipe/PipelineCategory.groovy
index ab2ead65..668e8f7b 100755
--- a/src/main/groovy/bpipe/PipelineCategory.groovy
+++ b/src/main/groovy/bpipe/PipelineCategory.groovy
@@ -211,7 +211,7 @@ class PipelineCategory {
                 log.info "Processing segment ${s.hashCode()}"
                 chrs.each { chr ->
                     log.info "Creating pipeline to run on chromosome $chr"
-                    Pipeline child = Pipeline.currentRuntimePipeline.get().fork(chr)
+                    Pipeline child = Pipeline.currentRuntimePipeline.get().fork(chr.toString())
                     currentStage.children << child
                     Closure segmentClosure = s
                     threads << {