A Singularity container definition for Singularity Hub and a turorial on reproducibility in computational biology.
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Singularity config for biotools container

A Singularity Hub definition for learning purposes. An associated tutorial on genomics can be found at http://reproducible.sschmeier.com.

If Singularity is installed locally, the container can be build (needs root access) locally like this:

sudo singularity build biotools.simg Singularity

The container can alos be downloaded from Singularity Hub without root access to the local machine like this:

singularity pull --name "biotools.simg" sschmeier/biotools:latest 

Then, it can be used, e.g.:

singularity exec biotools.simg samtools view -h