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Commits on Jun 25, 2015
Commits on Jun 9, 2015
  1. fixed bug in parser

    authored
Commits on Apr 10, 2015
  1. updated manual

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  2. Added Hybrid MPI-OpenMP Makefiles.

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    Fixed some potential type cast issues in likelihood functions.
  3. Alexey's hybrid version

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Commits on Jan 16, 2015
  1. normal tree searches (and not only the -f e option) will now also wri…

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    …te an ExaML_modelFile containing the model params of the
    
    final tree, I also updated the manual ccordingly.
Commits on Jan 7, 2015
  1. updated manual

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Commits on Jan 3, 2015
  1. updated the manual

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Commits on Dec 27, 2014
Commits on Dec 19, 2014
Commits on Dec 15, 2014
Commits on Dec 11, 2014
Commits on Dec 10, 2014
  1. update version number

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  2. fixed a bug in the parser

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  3. fixed compile issue

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  4. modified the parser such that sites consisting of completely undeterm…

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    …ined characters are excluded a priori from the binary file
Commits on Dec 5, 2014
  1. -integrated automatic protein selection criteria

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    -fixed round-off errors in protein substitution models
Commits on Nov 17, 2014
  1. added GNU GPL license

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Commits on Nov 8, 2014
Commits on Nov 3, 2014
  1. 1. added full high performance support for binary data

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    2. improved error handling and reporting
    3. fixed bug in checkpointing that lead to slightly diverging LnL values
       for partitions that use a ML estimate of base freqs
Commits on Oct 28, 2014
Commits on Oct 25, 2014
  1. added some verbose error checking that makes sure that the command li…

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    …ne arguments used in a restarted run
    
    from a checkpoint actually match those from the initial run that generated the checkpoint.
Commits on Oct 24, 2014
  1. modified the parser to print:

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    1. the number of unqiue patterns in the alignment
    2. the expected memory requirements of ExaML for storing the tip data and the
       inner Conditional likelihood vectors. Note that, this is slightly different
       from the on-line memory calculator, since this just computes mem. reqs. for inner CLVs.
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