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stamatakstamatak
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integrated david dao's faster implementation of the plausibility checker algorithm (-f R option)
1 parent 198ca23 commit cbe6887

34 files changed

Lines changed: 1295 additions & 61 deletions

‎Makefile.AVX.HYBRID.gcc‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -8,11 +8,11 @@ LIBRARIES = -lm -pthread
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RM = rm -f
1010

11-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
11+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
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all : raxmlHPC-HYBRID-AVX
1414

15-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
15+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
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raxmlHPC-HYBRID-AVX : $(objs)
1818
$(CC) -o raxmlHPC-HYBRID-AVX $(objs) $(LIBRARIES)
@@ -23,6 +23,7 @@ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
2323
fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2424
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
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26+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2627
classify.o : classify.c $(GLOBAL_DEPS)
2728
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
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bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX.MPI.gcc‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -8,11 +8,11 @@ LIBRARIES = -lm
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99
RM = rm -f
1010

11-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
11+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
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all : raxmlHPC-MPI-AVX
1414

15-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
15+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h
1616

1717
raxmlHPC-MPI-AVX : $(objs)
1818
$(CC) -o raxmlHPC-MPI-AVX $(objs) $(LIBRARIES)
@@ -23,6 +23,7 @@ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
2323
fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2424
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
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26+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2627
classify.o : classify.c $(GLOBAL_DEPS)
2728
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
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bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX.PTHREADS.gcc‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -10,11 +10,11 @@ LIBRARIES = -lm -pthread
1010

1111
RM = rm -f
1212

13-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
13+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
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all : raxmlHPC
1616

17-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
17+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
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1919
raxmlHPC : $(objs)
2020
$(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES)
@@ -26,6 +26,7 @@ fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
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$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
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#rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
29+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2930
classify.o : classify.c $(GLOBAL_DEPS)
3031
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
3132
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX.PTHREADS.mac‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -10,11 +10,11 @@ LIBRARIES = -lm -pthread
1010

1111
RM = rm -f
1212

13-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
13+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
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all : raxmlHPC
1616

17-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
17+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
1818

1919
raxmlHPC : $(objs)
2020
$(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES)
@@ -26,6 +26,7 @@ fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
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$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
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#rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
29+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2930
classify.o : classify.c $(GLOBAL_DEPS)
3031
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
3132
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX.gcc‎

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -3,17 +3,17 @@
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CC = gcc
55

6-
CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast
6+
CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast
77

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LIBRARIES = -lm
99

1010
RM = rm -f
1111

12-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
12+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
1313

1414
all : raxmlHPC
1515

16-
GLOBAL_DEPS = axml.h globalVariables.h
16+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h
1717

1818
raxmlHPC : $(objs)
1919
$(CC) -o raxmlHPC-AVX $(objs) $(LIBRARIES)
@@ -24,6 +24,7 @@ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
2424
fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2525
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
2626

27+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2728
classify.o : classify.c $(GLOBAL_DEPS)
2829
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
2930
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX.mac‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -9,11 +9,11 @@ LIBRARIES = -lm
99

1010
RM = rm -f
1111

12-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
12+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
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all : raxmlHPC
1515

16-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
16+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h
1717

1818
raxmlHPC : $(objs)
1919
$(CC) -o raxmlHPC-AVX $(objs) $(LIBRARIES)
@@ -26,6 +26,7 @@ fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2626

2727

2828

29+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2930
classify.o : classify.c $(GLOBAL_DEPS)
3031
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
3132
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX2.HYBRID.gcc‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -8,11 +8,11 @@ LIBRARIES = -lm -pthread
88

99
RM = rm -f
1010

11-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
11+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
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all : raxmlHPC-HYBRID-AVX2
1414

15-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
15+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
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raxmlHPC-HYBRID-AVX2 : $(objs)
1818
$(CC) -o raxmlHPC-HYBRID-AVX2 $(objs) $(LIBRARIES)
@@ -23,6 +23,7 @@ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
2323
fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2424
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
2525

26+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2627
classify.o : classify.c $(GLOBAL_DEPS)
2728
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
2829
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX2.MPI.gcc‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -8,11 +8,11 @@ LIBRARIES = -lm
88

99
RM = rm -f
1010

11-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
11+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
1212

1313
all : raxmlHPC-MPI-AVX2
1414

15-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
15+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h
1616

1717
raxmlHPC-MPI-AVX2 : $(objs)
1818
$(CC) -o raxmlHPC-MPI-AVX2 $(objs) $(LIBRARIES)
@@ -23,6 +23,7 @@ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
2323
fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2424
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
2525

26+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2627
classify.o : classify.c $(GLOBAL_DEPS)
2728
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
2829
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX2.PTHREADS.gcc‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -10,11 +10,11 @@ LIBRARIES = -lm -pthread
1010

1111
RM = rm -f
1212

13-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
13+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
1414

1515
all : raxmlHPC
1616

17-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
17+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
1818

1919
raxmlHPC : $(objs)
2020
$(CC) -o raxmlHPC-PTHREADS-AVX2 $(objs) $(LIBRARIES)
@@ -26,6 +26,7 @@ fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2626
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
2727

2828
#rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
29+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2930
classify.o : classify.c $(GLOBAL_DEPS)
3031
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
3132
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

‎Makefile.AVX2.PTHREADS.mac‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -10,11 +10,11 @@ LIBRARIES = -lm -pthread
1010

1111
RM = rm -f
1212

13-
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
13+
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
1414

1515
all : raxmlHPC
1616

17-
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
17+
GLOBAL_DEPS = axml.h globalVariables.h rmq.h rmqs.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
1818

1919
raxmlHPC : $(objs)
2020
$(CC) -o raxmlHPC-PTHREADS-AVX2 $(objs) $(LIBRARIES)
@@ -26,6 +26,7 @@ fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
2626
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
2727

2828
#rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
29+
rmqs.o : rmqs.c $(GLOBAL_DEPS)
2930
classify.o : classify.c $(GLOBAL_DEPS)
3031
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
3132
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)

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