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Bioinformatic Pipelines

4 repositories

dietJuicer is a lighter-weight, HPC flexible version of juicer written with snakemake

Awk 5 8 Updated May 16, 2024

New and improved snakemake pipelines for RNA-seq, ChIP-seq, and ATAC-seq processing for the Phanstiel Lab

Python 1 Updated Sep 12, 2022

Snakemake pipeline for processing MicroC data following guidelines from Dovetail Genomics (https://micro-c.readthedocs.io/en/latest/index.html).

Python 3 2 Updated Feb 3, 2022
Dockerfile 1 Updated Apr 16, 2023