This repository is for the command line (standalone) version of LocusZoom, an application for creating regional plots from genome-wide association studies built in Python and R.
Documentation for this program is available on our wiki: http://genome.sph.umich.edu/wiki/LocusZoom_Standalone
This version of LocusZoom is no longer under active development. Bug fixes and small updates may be made, though it is unlikely.
A new web-based interactive version of LocusZoom is currently under active development. Please see the locuszoom.js github site for information on using it on your own sites, or see a preview of it in action at locuszoom.org.
|Program + database + LD files||1.4||2017-05-01||23G|
|Program + database||1.4||2017-05-01||16G|
|Program + database + LD files||1.3||2014-06-20||10G|
|Program + database||1.3||2014-06-20||4.3G|
Database contains required data for LocusZoom to function, though you can skip it if you are already creating your own.
LD files are entirely optional - you can calculate LD instead from your own genotype files (
--ld-vcf), or not at all (
A full list of changes for each version can be found in the changelog.
- Submit an issue to the repository: https://github.com/statgen/locuszoom-standalone/issues
- Post a message to the Google Group: https://groups.google.com/forum/#!forum/locuszoom