samtools v0.1.7a with updated bgzf logic and "calmd" logic
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examples
misc
win32
.gitignore
AUTHORS
COPYING
ChangeLog
HYBRID_VERSION
INSTALL
Makefile
Makefile.mingw
NEWS
bam.c
bam.h
bam_aux.c
bam_color.c
bam_endian.h
bam_import.c
bam_index.c
bam_lpileup.c
bam_maqcns.c
bam_maqcns.h
bam_mate.c
bam_md.c
bam_pileup.c
bam_plcmd.c
bam_rmdup.c
bam_rmdupse.c
bam_sort.c
bam_stat.c
bam_tview.c
bamtk.c
bgzf.c
bgzf.h
bgzip.c
faidx.c
faidx.h
glf.c
glf.h
kaln.c
kaln.h
khash.h
klist.h
knetfile.c
knetfile.h
kprobaln.c
kprobaln.h
kseq.h
ksort.h
kstring.c
kstring.h
razf.c
razf.h
razip.c
sam.c
sam.h
sam_header.c
sam_header.h
sam_view.c
samtools.1
samtools.txt