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samtools v0.1.7a with updated bgzf logic and "calmd" logic
C C++ Perl
branch: master
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examples Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
misc Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
win32 Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
.gitignore Add .gitignore
AUTHORS Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
COPYING Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
ChangeLog Update the modified files to r983 to pick up the extended-BAQ logic p…
HYBRID_VERSION HYBRID_VERSION
INSTALL Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
Makefile Fix Makefile library include order and Update faidx to output an erro…
Makefile.mingw Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
NEWS Update the modified files to r983 to pick up the extended-BAQ logic p…
bam.c update to fail on missing EOF marker by default
bam.h update to fail on missing EOF marker by default
bam_aux.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_color.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_endian.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_import.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_index.c fix bam->bai check
bam_lpileup.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_maqcns.c Add -Q option to pileup for creating glf files
bam_maqcns.h Add -Q option to pileup for creating glf files
bam_mate.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_md.c Update the modified files to r983 to pick up the extended-BAQ logic p…
bam_pileup.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_plcmd.c update to fail on missing EOF marker by default
bam_rmdup.c update to fail on missing EOF marker by default
bam_rmdupse.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_sort.c update to fail on missing EOF marker by default
bam_stat.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bam_tview.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
bamtk.c Update the modified files to r983 to pick up the extended-BAQ logic p…
bgzf.c Update the modified files to r983 to pick up the extended-BAQ logic p…
bgzf.h Update the modified files to r983 to pick up the extended-BAQ logic p…
bgzip.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
faidx.c Update faidx error message for invalid chromosome to specify the chro…
faidx.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
glf.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
glf.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
kaln.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
kaln.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
khash.h Update the modified files to r983 to pick up the extended-BAQ logic p…
klist.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
knetfile.c Update the modified files to r983 to pick up the extended-BAQ logic p…
knetfile.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
kprobaln.c Update the modified files to r983 to pick up the extended-BAQ logic p…
kprobaln.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
kseq.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
ksort.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
kstring.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
kstring.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
razf.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
razf.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
razip.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
sam.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
sam.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
sam_header.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
sam_header.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
sam_view.c update to fail on missing EOF marker by default
samtools.1 Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
samtools.txt Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b…
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