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samtools v0.1.7a with updated bgzf logic and "calmd" logic
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Latest commit 69a6fb0 Nov 25, 2013 @mktrost mktrost HYBRID_VERSION
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examples
misc Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
win32 Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
.gitignore
AUTHORS
COPYING Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
ChangeLog
HYBRID_VERSION
INSTALL
Makefile Fix Makefile library include order and Update faidx to output an erro… Aug 13, 2012
Makefile.mingw
NEWS
bam.c update to fail on missing EOF marker by default Nov 25, 2013
bam.h update to fail on missing EOF marker by default Nov 25, 2013
bam_aux.c
bam_color.c
bam_endian.h
bam_import.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
bam_index.c
bam_lpileup.c
bam_maqcns.c
bam_maqcns.h
bam_mate.c
bam_md.c
bam_pileup.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
bam_plcmd.c
bam_rmdup.c
bam_rmdupse.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
bam_sort.c
bam_stat.c
bam_tview.c
bamtk.c
bgzf.c
bgzf.h
bgzip.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
faidx.c
faidx.h
glf.c
glf.h
kaln.c
kaln.h
khash.h
klist.h
knetfile.c
knetfile.h
kprobaln.c
kprobaln.h
kseq.h
ksort.h
kstring.c
kstring.h
razf.c Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
razf.h
razip.c
sam.c
sam.h
sam_header.c
sam_header.h Samtools hybrid version of 7a & 12a. Basically it is 7a, pulling in b… Apr 29, 2011
sam_view.c
samtools.1
samtools.txt
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