R functions to develop the application examples presented in "Permutation Tests for Complex Data: Theory, Applications and Software" - Pesarin, Salmaso
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README.md

permuter

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R functions to develop the application examples presented in "Permutation Tests for Complex Data: Theory, Applications and Software" - Pesarin, Salmaso

http://www.wiley.com/legacy/wileychi/pesarin/material.html

Install

To install permuter, run the following line in R:

devtools::install_github("statlab/permuter")

Development process

The development process will follow the conventions in R Packages.

  • You will need the following packages: devtools, roxygen2, and testthat.

  • Load in the functions and data using devtools::load_all() or cmd+shift+L in RStudio.

  • When you've updated documentation, run devtools::document() or cmd+shift+D in RStudio to compile it.

  • Write tests for all functions and run devtools::test() or cmd+shift+T in RStudio to run all the tests.

  • Cmd+shift+B in RStudio restarts the session and rebuilds the R package, running all tests in the process.

  • In the terminal, calling make tidy puts all vignettes and R files into the correct stylistic format.

  • In the terminal, calling make vignettes creates all the vignettes as html documents.