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---
title: Interactive Cluster Analysis
author: Stefan Avey
output:
html_document:
toc: true
toc_depth: 2
runtime: shiny
---
```{r createDocument, eval=FALSE, echo=FALSE}
library(rmarkdown)
rmarkdown::run('mainPage.Rmd') # for interactive document
## For deployment to shinyapps.io only!
library(shinyapps)
shinyapps::deployApp(appDir=getwd(), appName="cluster-analysis")
```
# Introduction
```{r intro, echo = FALSE, eval=TRUE}
includeMarkdown("introduction/intro.md")
```
# Upload data
Use the file uploader below to select a CSV file.
```{r fileupload, echo = FALSE, eval=TRUE, message=FALSE, warning=TRUE}
datGlobal <- NULL # Start with NULL and set when file is uploaded
shinyAppDir(
"fileUpload/",
options=list(width="100%", height=600)
)
```
## Clustering
```{r clustering, echo = FALSE, eval=TRUE, message=FALSE, warning=TRUE}
shinyAppDir(
"clustering/",
options=list(width="100%", height=700)
)
```
## Gene Ranking
```{r ranking, echo = FALSE, eval=TRUE, message=FALSE, warning=TRUE}
shinyAppDir(
"ranking/",
options=list(width="100%", height=700)
)
```
# Acknowledgements
```{r acknowledge, echo = FALSE, eval=TRUE}
includeMarkdown("acknowledgements/ack.md")
```
<footer>
<center><medium>View <a href="http://github.com/stefanavey/cluster-analysis" target="_blank" title="Cluster Analysis Source Code">Source Code</a> on Github</medium></center>
<center><small><em>Version 0.0.1004</em> - Last Updated 2015-05-04</small></center>
</footer>
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