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Fixing code to assume msg_type and msg_id are top-level.
* I have gone through and looked for instances of ['msg_type'] and ['msg_id'] and tried to make sure that I added ['header'] so pull the values out of the header. * But there are many cases where I can't tell if the dict is the full message or the header already. This is especially true of the msg_id in the parallel db parts of the code. * Tests pass, but this is scary.
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