Skip to content

steibelj/gwaR

master
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
R
 
 
 
 
man
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

gwaR

This package implements GWA from GBLUP model following Gualdron Duarte et al (2014) - http://www.biomedcentral.com/1471-2105/15/246/abstract

The packagte is under developement, but it is functional.

To install use: devtools::install_github("steibelj/gwaR",build_vignettes=T)

A quick introduction: vignette("intro-to-gblup")

###Future commits:

  1. ONGOING: improve documentation to expand to other capabilities

  2. DONE: improve plot functions: better graphics

  3. include predict method - DONE for training set (summary.gblup) PENDING: validation set

  4. implement multi-core computation

  5. DONE: LRT functions for forward, backward comparison

  6. implement high-throughput functions for massively paralell phenotypes

  7. include functions for GWA peak annotation from genomic dBs

  8. make memory efficient for extra-large systems of equations (seveal 10000s animals)

  9. implement META-ANALYSIS according to Yeni's paper

  10. implement shrinkage tests according to Misztal's groups papers

About

A package for GWA from GBLUP models

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages