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README.md

gwaR

This package implements GWA from GBLUP model following Gualdron Duarte et al (2014) - http://www.biomedcentral.com/1471-2105/15/246/abstract

The packagte is under developement, but it is functional.

To install use: devtools::install_github("steibelj/gwaR",build_vignettes=T)

A quick introduction: vignette("intro-to-gblup")

###Future commits:

  1. ONGOING: improve documentation to expand to other capabilities

  2. DONE: improve plot functions: better graphics

  3. include predict method - DONE for training set (summary.gblup) PENDING: validation set

  4. implement multi-core computation

  5. DONE: LRT functions for forward, backward comparison

  6. implement high-throughput functions for massively paralell phenotypes

  7. include functions for GWA peak annotation from genomic dBs

  8. make memory efficient for extra-large systems of equations (seveal 10000s animals)

  9. implement META-ANALYSIS according to Yeni's paper

  10. implement shrinkage tests according to Misztal's groups papers

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A package for GWA from GBLUP models

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