Base functions for bioinformatics and R package development.
R
Latest commit 9316753 Jul 17, 2018

README.md

basejump

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Base functions for bioinformatics and R package development.

Installation

This is an R package.

Bioconductor method

We recommend using R 3.5 / Bioconductor 3.7.

R >= 3.5

install.packages("BiocManager")
library(BiocManager)
install("devtools")
install("GenomeInfoDbData")
install("steinbaugh/basejump")

R < 3.5

Legacy support for R 3.4 / Bioconductor 3.6 is provided.

# try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("devtools")
biocLite("GenomeInfoDbData")
biocLite("steinbaugh/basejump")

conda method

conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda install -c bioconda r-basejump