🐢 Shell bootloader for bioinformatics.
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README.md

koopa 🐢

Build Status Project Status: Active – The project has reached a stable, usable state and is being actively developed.

Shell bootloader for bioinformatics.

Installation

Bash shell running on either Linux or macOS is currently supported.

First, clone the repository:

git clone https://github.com/steinbaugh/koopa.git ~/koopa

Second, add these lines to ~/.bash_profile:

# koopa shell
# https://github.com/steinbaugh/koopa
source ~/koopa/bin/koopa activate

Koopa should now activate at login. To obtain information on the current working enviroment, simply run koopa info.

High-performance computing (HPC) environment

Since workload managers (e.g. Slurm, LSF) can spawn non-interactive login shells for new jobs, we recommend additionally symlinking ~/.bashrc to ~/.bash_profile. For non-interactive login shells, koopa doesn't attempt to print any messages, so the shell remains clean.