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Update inDrop templates

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mjsteinbaugh committed Oct 6, 2017
1 parent 455ab52 commit d611a48599d1a07d25e0708881af8b9511b854ba
@@ -1,6 +1,6 @@
# Template for D. melanogaster scRNA-seq using Illumina prepared samples
# Dependency files must be saved into the work directory
# 2017-05-30
# 2017-10-06
---
details:
- analysis: scRNA-seq
@@ -1,16 +1,15 @@
# Template for M. musculus scRNA-seq using Illumina prepared samples
# Dependency files must be saved into the work directory
# 2017-05-30
# 2017-10-06
---
details:
- analysis: scRNA-seq
genome_build: mm10
algorithm:
cellular_barcode_correction: 1
cellular_barcodes: [cellular_barcodes.txt, cellular_barcodes_reverse_complement.txt]
minimum_barcode_depth: 10000
minimum_barcode_depth: 1000
sample_barcodes: sample_barcodes_reverse_complement.txt
singlecell_quantifier: rapmap
# ftp://ftp.ensembl.org/pub/current_fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz
# ftp://ftp.ensembl.org/pub/current_fasta/mus_musculus/cdna
transcriptome_fasta: Mus_musculus.GRCm38.cdna.all.fa
umi_type: harvard-indrop-v3

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