Parameterized fast gene set enrichment analysis.
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README.md

pfgsea

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.

Parameterized Fast GSEA

pfgsea extends the functionality of fgsea. The package is designed to quickly perform multiple GSEA comparisons on RNA-seq differential expression results.

Installation

This is an R package.

Bioconductor method

We recommend installing the package with BiocManager.

if (!require("BiocManager")) {
    install.packages("BiocManager")
}
BiocManager::install("remotes")
BiocManager::install("steinbaugh/pfgsea")