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A set of scripts used to taxonomically assess the sequences in an NGS dataset
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LICENSE
README.md
contig_based_taxonomic_assessment
contig_based_taxonomic_assessment_single_end
copy_paired_files
copy_single_end_files
filter_ag_reads
filter_cow_reads
filter_human_reads
filter_mouse_reads
filter_tick_reads
filter_tick_reads_single_end
read_based_taxonomic_assessment
read_based_taxonomic_assessment_single_end
rename_files
run_bt
run_bt_align_paired
run_pipeline_one_sample
run_pipeline_single_end_one_sample
run_preprocessing_pipeline_one_sample
run_preprocessing_pipeline_single_end_one_sample

README.md

taxonomy_pipeline

A set of scripts used to taxonomically assess the sequences in an NGS dataset

Documentation pending - stay tuned

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