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PhyML -- Phylogenetic estimation using (Maximum) Likelihood
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README.md

Build Status install with bioconda

1. You downloaded a stable release of PhyML from here

To install any program that is part of the PhyML package, type the following commands:

./configure --enable-XXXX;
make;

where XXXX is phyml or phyrex or phytime.

To compile a Windows executable, install MinGW and run:

./configure --enable-win --enable-XXXX;
make;

To install the MPI version of PhyML, type the following commands:

autoreconf -i;
./configure --enable-mpi --enable-phyml;
make;

If you are using a Mac computer, you will need to install the package pkg-config. The following command should set you up (provided Homebrew is installed on your Mac...): brew install pkg-config; Next, typing ./configure --enable-XXXX; make; should generate the phyml binary in the src/ directory.

2. You cloned PhyML from GitHub

To install any program that is part of the PhyML package, type the following command:

sh ./autogen.sh;

If you are using a Mac computer or running a Unix-like operating system, you will need to install the packages autoconf automake and pkg-config. On a Mac, the following command should set you up (provided Homebrew is installed on your Mac...): brew install pkg-config autoconf automake;

Next, typing ./configure --enable-XXXX; make; should generate the phyml binary in the src/ directory, where XXXX is phyml or phyrex or phytime.

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