PhyML -- Phylogenetic estimation using (Maximum) Likelihood
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README

//////////////////////////////////////////////////////////////////////////////////////////////////////
// You downloaded a stable release  of PhyML from https://github.com/stephaneguindon/phyml/releases //
//////////////////////////////////////////////////////////////////////////////////////////////////////

To install any program that is part of the PhyML package, type the following commands:
./configure --enable-XXXX;
make;
where XXXX is phyml or phyrex or phytime.

To compile a Windows executable, install MinGW and run:
./configure --enable-win --enable-XXXX;
make;

To install the MPI version of PhyML, type the following commands:
autoreconf -i;
./configure --enable-mpi --enable-phyml;
make;

If you are using a Mac computer, you will need to install the package pkg-config. The
following command should set you up (provided Homebrew is installed on your Mac...):
brew install pkg-config; Next, typing './configure --enable-XXXX; make;' should generate
the phyml binary in the src/ directory.



//////////////////////////////////////////////////////////////////////////
//                    You have cloned PhyML from GitHub                 //
//////////////////////////////////////////////////////////////////////////

To install any program that is part of the PhyML package, type the following command:
sh ./autogen.sh;

If you are using a Mac computer or running a Unix-like operating system, you will need 
to install the packages autoconf automake and pkg-config. On a Mac, the following command 
should set you up (provided Homebrew is installed on your Mac...): brew install pkg-config
autoconf automake;

Next, typing './configure --enable-XXXX; make;' should generate the phyml binary in the src/
directory, where XXXX is phyml or phyrex or phytime.