SCAT software for "Smoothed and Continuous Assignment Tests"
C++ C Makefile
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docs add pdf of instructions Oct 22, 2015
src Rename SCAT to SCAT2 Jan 24, 2016
README.md Add example usage Jan 24, 2016

README.md

Repository for the SCAT code from Wasser et al

If you download this code, please take a moment to "star" the repo (click star). This will let me know that someone is interested in using the code, which will allow me to prioritize development. If no-one stars it I'll assume no-one finds it useful :).

  • C++ software by M Stephens.

  • Current version is version 2.1 (SCAT2)

  • C++ code is in src/

##Compile

cd src/
make

##Run on example data

 cd src/
 ./SCAT2 ../docs/test.genotype.txt ../docs/test.location.txt . 2