This repo contains the "curriculum" and resources for a genomic and protein language model reading group at University of Colorado Boulder/Anschutz.
Email hope.townsend@colorado.edu for additional info or questions
Join the Google Calendar via this link or this one (in case the other doesn't work)
For Spring '25 schedule and materials can be found in Spring_2025 folder. Fall '24 resources are archived in the Fall_2024 folder. Introductory material can be found below.
Our "treasure map" for top companies, skills, social media accounts, etc for Biology in AI. Feel free to add to it!
"Visual Dictionary" explaining some of the most common concepts/terms in AI
"Cool Papers" is a slide show with slides designated to papers that might be worth looking at for your research
- How large language models work, a visual intro to transformers
- Attention in transformers, visually explained
- How might LLMs store facts
- Main paper: BERTology Meets Biology: Interpreting Attention in Protein Language Models”.
- Video (first 10-12 min are over bio, other the model)