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Some more generic fixes for building in a remote directory
This patch fixes a few more issues related to building in a remote directory. The start of the problem was that the version file was not getting built correctly. This necessitated using vpath instead of VPATH to only allow the %.cc files. After that a few other places needed to have $(srcdir) added. The distclean target was also enhance so that when building from a remote directory (srcdir != .) we remove all the extra files and directories.
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