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Fix MinGW make distclean and add <file>.in dependencies.
This patch fixes the crash in MinGW make distclean. The problem was that vpi/ and driver-vpi/ were being called twice and the MinGW make was failing on the second call since the Makefile was already removed. Add a dependency on config.h and _pli_types.h in the make all target. It is likely that only _pli_types.h was needed, but this makes it clear that they need to be rebuilt if the .in files change. The lower directories that depend on the top level config.status now have a target to rebuild the local Makefile file it the corresponding Makefile.in changes.
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