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Pinned
1,370 contributions in the last year
Activity overview
Contributed to
NYU-Molecular-Pathology/NGS580-nf,
NYU-Molecular-Pathology/IR-interpreter,
NYU-Molecular-Pathology/demux-nf
and 5 other
repositories
Contribution activity
May 2019
stevekm has no activity
yet for this period.
April 2019
-
stevekm/Rx-Adherence-app
Python
•
Built by
- stevekm/image-sort Python
- stevekm/BADAS_Nextflow_Tutorial Nextflow
Created an issue in NYU-Molecular-Pathology/NGS580-nf that received 1 comment
Add subdirs to publishDirs for .bam files
Right now all the .bam files are published to a single directory, need to add subdirs based on the type of .bam file it is
1
comment
- Need karyotype plot
- Need to refactor LoFreq and HaplotypeCaller to use separate filter and tsv processes
- Need to update TMB calculation methods for pairs, unpaired samples
- Need to run genomic signatures for all variant callers
- Add CNVKit refFlat targets file creation method
- Add configs for different targets.bed files
- Need to refactor variable name in cnvkit process
2
contributions
in private repositories
Apr 17