Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

JSON Metrics output #37

Open
apeltzer opened this issue Feb 14, 2024 · 0 comments
Open

JSON Metrics output #37

apeltzer opened this issue Feb 14, 2024 · 0 comments

Comments

@apeltzer
Copy link

I'd love to write a MultiQC module for this, but in order to facilitate this, would it be possible to write outputs in a JSON format for easier parsing?

e.g. FASTP does this, so we can directly load the metrics to show them in a MultiQC report. I'm working on a small validator workflow that includes fq_lint and it works nicely, but making the metrics directly accessible in a larger table would be really cool.

https://github.com/MultiQC/MultiQC/blob/main/multiqc/modules/fastp/fastp.py as an example how the JSON could look like.

https://github.com/MultiQC/test-data/tree/main/data/modules/fastp

Not too familiar with rust, otherwise I'd have opened a PR already ;-)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant