From 6d6054a5bc6aba67a7cd727cdb9ec133488f7420 Mon Sep 17 00:00:00 2001 From: Ssandor13 <92056310+Ssandor13@users.noreply.github.com> Date: Tue, 6 Feb 2024 10:22:43 -0600 Subject: [PATCH] fixed a typo --- docs/pecan/expression/index.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/docs/pecan/expression/index.md b/docs/pecan/expression/index.md index 6f29fcf..e6c6099 100644 --- a/docs/pecan/expression/index.md +++ b/docs/pecan/expression/index.md @@ -37,21 +37,27 @@ Filtering by the sunburst will auto-populate the diagnosis and subtype filter. A !!! **Filters Explained** + ### Tumor Sample + 1. Sample ID - A user can search individual St. Jude CompBio IDs or bulk search IDs that are comma separated. This field allows for a multi-select. 2. Subtype - This is a modal whereby a user can custom select which subtypes to view in the plot. Child nodes will automatically become enabled or disabled if a parent node is (de)selected. The number of samples and the subtype color is desginated in the modal for reference. 3. Subtype Biomarker - This field allows a multi-select of subtype biomarkers to be applied to the plot. *Note: the user cannot apply a general gene like "CTNNB1" to be applied across the plot. The user must select all biomarkers they are interested in seeing from the dropdown* 4. Sample Type - This field is a multi-select dropdown. + ### Patient Phenotype + 1. Sex - A multi-select dropdown. 2. Age at Diagnosis - A scale whereby a user can manually type in the age parameters or use the scale (in years). A user can type in any age, even passed our "35+" parameter. 3. Race - This is a multi-select dropdown. 4. Ethnicity - This is multi-select dropdown. + ### Sample Preparation + 1. Library Selection Protocol - This is a multi-select dropdown. 2. Preservative - This is a mutli-select dropwdown -!!!Warning +!!!warning There can be fields with a "Not Available" option for samples that did not have this value recorded (e.g., Race, Ethnicity, Sex). !!!