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stnava edited this page Jul 18, 2016
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Pages 14
- Home
- ANTsR Dependencies for (close to) full functionality
- build a package based on antsr to test on travis
- Contributing code to ANTsR
- Eigenanatomy: Overview and decomposition of current work with pointers to software
- general questions about how to build a template
- Image plotting example with multiple overlays
- Installing ANTsR in Windows 10 (along with FSL, Rstudio, Freesurfer, etc).
- Map multiple modalities to a template space
- MNI Coordinates in ANTsR (and ANTs)
- Multistart optimization for challenging registration problems
- Multivariate K means with ANTsR
- nonrigid motion correction example
- PASL
Clone this wiki locally
Welcome to the ANTsR wiki!
You can clone this repository for additional information.
See the sidebar for different notes and examples based on ANTsR.
More content is available in vignettes and in the ANTsR manual (see the release page).
quick tip: add export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=10 to your profile to enable multi-threading! can massively speed-up registration, segmentation and some basic operations ... but be careful if you are using on a cluster.
quick tip: you can link optimized numeric libraries to your installed R version in order to greatly accelerate matrix algebra. example on OSX:
cd /Library/Frameworks/R.framework/Resources/lib
ln -sf
/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/libBLAS.dylib
libRblas.dylib
# then in R
system.time({ x <- replicate(5e3, rnorm(5e3)); tcrossprod(x) })
library(ANTsR)