ANTsR Dependencies for (close to) full functionality
stnava edited this page Aug 2, 2016
·
3 revisions
Pages 14
- Home
- ANTsR Dependencies for (close to) full functionality
- build a package based on antsr to test on travis
- Contributing code to ANTsR
- Eigenanatomy: Overview and decomposition of current work with pointers to software
- general questions about how to build a template
- Image plotting example with multiple overlays
- Installing ANTsR in Windows 10 (along with FSL, Rstudio, Freesurfer, etc).
- Map multiple modalities to a template space
- MNI Coordinates in ANTsR (and ANTs)
- Multistart optimization for challenging registration problems
- Multivariate K means with ANTsR
- nonrigid motion correction example
- PASL
Clone this wiki locally
We allow ANTsR to be installed without forcing a full dependency list. But more packages means more functionality. Here are packages that we commonly use in production:
install.packages(
c(
"Rcpp","magrittr","dplyr",
"abind",
"BGLR",
"caret",
"cluster",
"d3Network",
"DMwR",
"e1071",
"extremevalues",
"fastICA",
"fpc",
"glasso",
"glmnet",
"grid",
"igraph",
"knitr",
"lme4",
"magic",
"MASS",
"mFilter",
"misc3d",
"moments",
"nabor",
"pixmap",
"png",
"pracma",
"psych",
"randomForest",
"rgl",
"rmarkdown",
"robust",
"robustbase",
"RRedsvd",
"signal",
"sna",
"testthat",
"visreg",
"wmtsa")
)
library(ANTsR)