@StoreyLab

Storey Lab

Storey Lab at Princeton University

Pinned repositories

  1. qvalue

    R package to estimate q-values and false discovery rate quantities.

    R 34 16

  2. edge

    R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.

    R 9 5

  3. gcatest

    genotype conditional association test

    R 4 2

  4. lfa

    logistic factor analysis

    R 11 3

  5. popkin

    R package to estimate kinship and FST from SNP data

    R 8

  6. terastructure

    TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This pa…

    C++ 35 8

  • R package to estimate kinship and FST from SNP data

    R 8 Updated Oct 26, 2018
  • Tidy up computational biology objects

    R 40 11 Updated Sep 3, 2018
  • R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.

    R 9 5 Updated Aug 30, 2018
  • An R package that implements the ALStructure algorithm for estimating the admixture model of genetic population structure

    HTML 5 MIT Updated May 26, 2018
  • TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.

    C++ 35 8 GPL-3.0 Updated Apr 10, 2018
  • R package to estimate q-values and false discovery rate quantities.

    R 34 16 Updated Mar 9, 2018
  • logistic factor analysis

    R 11 3 Updated Feb 11, 2018
  • R package to model and simulate admixed populations

    R 4 Updated Feb 1, 2018
  • HTML Updated Jan 27, 2018
  • Subsampling of high-throughput sequencing count data

    R 14 2 MIT Updated Nov 8, 2016
  • genotype conditional association test

    R 4 2 Updated Oct 6, 2016
  • A collection of papers and books that Storey Lab members should read and others may find useful

    38 8 Updated Oct 19, 2015
  • R Updated Oct 12, 2015
  • This package has been renamed gcatest: https://github.com/StoreyLab/gcatest

    R 2 Updated Oct 5, 2015
  • DNAMIX is a computer program to calcluate likelihood ratios as they pertain to mixed DNA samples encountered in forensic science.

    Fortran Updated Sep 10, 2015
  • TeX Updated Jul 19, 2015
  • a shiny website for the q-value package.

    R 1 Updated Apr 20, 2015
  • Dividing RNA-Seq reads based on their ancestral genotype

    Python 3 GPL-3.0 Updated Mar 21, 2015
  • Supplementary Materials for the manuscript "A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays" by Robinson, Wang, and Storey

    R 1 1 Updated Feb 3, 2015
  • Match barcodes in sequencing data based on Levenshtein distance

    C++ 2 Updated Oct 3, 2014

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