From 62a34cf67a000dc01ffcb0d6718ca9d92886ea15 Mon Sep 17 00:00:00 2001 From: yangchoo Date: Mon, 13 Sep 2021 08:17:39 -0700 Subject: [PATCH 1/2] build: Update base Dockerfile Update base Python version to 3.7 --- CHANGELOG.rst | 8 ++++++++ Dockerfile | 2 +- 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 37c47db5..0de38df8 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,5 +1,13 @@ Changelog ========= + +Unreleased +---------- + +Fixed +----- +- upgraded base docker image to 3.7 to fix nbgitpuller error + v9.4.2 ------ diff --git a/Dockerfile b/Dockerfile index a7726bd0..fa3110b1 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM python:3.6-slim-buster +FROM python:3.7-slim-buster MAINTAINER Strateos From fec9241b6b401c734820788240277ed88e02978c Mon Sep 17 00:00:00 2001 From: yangchoo Date: Mon, 13 Sep 2021 08:25:33 -0700 Subject: [PATCH 2/2] pin nbgitpuller version to 1.* --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index fa3110b1..9869c8e6 100644 --- a/Dockerfile +++ b/Dockerfile @@ -30,7 +30,7 @@ ENV PYTHON_EGG_CACHE /python_eggs # Install Jupyter, nbgitpuller for separate notebook/environment RUN pip install --no-cache-dir notebook==5.* && \ - pip install nbgitpuller + pip install nbgitpuller==1.* # Install TxPy RUN pip install 'transcriptic[jupyter, analysis]'