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@PavlidisLab

Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

HTML 1 1 Updated Nov 14, 2018

scRNA-seq data visualization from scrattch

R 5 1 Updated Oct 29, 2018
3 Updated Nov 14, 2018
R 2 1 Updated Sep 18, 2018

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

R 14 2 Updated Nov 17, 2018
Jupyter Notebook 3 1 Updated May 2, 2018

Identify cell types underlying the associations found in GWAS summary statistics

R 4 1 Updated Nov 16, 2018

R package for analyzing single-cell RNA-seq data

R 105 46 Updated Mar 8, 2018
HTML 2 2 Updated Nov 13, 2018

Blue Brain Nexus - A knowledge graph for data-driven science

JavaScript 69 19 Updated Nov 16, 2018
R 12 3 Updated Mar 1, 2018

Code and manuscript files for Aaron and Karsten's deconvolution paper.

TeX 14 5 Updated Sep 8, 2018

🐭 ↔️ 👫 An r package that works as a wrapper to homologene

R 12 2 Updated Aug 22, 2018

Out of date forever!! Migrated to https://github.com/PavlidisLab/neuroExpressoAnalysis

R 5 1 Updated Sep 8, 2016

A parser for Google Scholar, written in Python

Python 1,481 639 Updated Nov 6, 2018

Utilities to extract and manipulate Django Fixtures.

Python 263 79 Updated Oct 6, 2018

Automated Machine Learning with scikit-learn

Python 2,751 547 Updated Nov 15, 2018

Python client for Sherlok

Python 1 1 Updated Jun 20, 2016

HTML5 based online tool to extract numerical data from plot images.

JavaScript 653 97 Updated Aug 25, 2018

Semantic enrichment for Elasticsearch using Sherlok

Java 3 2 Updated Jul 11, 2015

Tools and curated datasets to build quantitative models of C. elegans ion channels

JavaScript 11 10 Updated Aug 27, 2018

A package for data-driven validation of neuron and ion channel models using SciUnit

Jupyter Notebook 17 11 Updated Nov 14, 2018

viewer for neuroNER output data

JavaScript 3 1 Updated Jun 12, 2015

Python 3 tools for data mining in molecular biology

Python 10 2 Updated Sep 14, 2015

The NeuroElectro Project: Compiling information on neuron electrophysiology through literature text-mining.

HTML 13 4 Updated Sep 6, 2016

Extending the analysis from AIBS mesoscale connectome paper

2 Updated Apr 23, 2014

A program for viewing and analyzing electrophysiological data

C++ 29 18 Updated Oct 5, 2018

Tools for automatic extraction of activation coordinates from published neuroimaging articles.

HTML 25 21 Updated Jul 9, 2018

Web scraper to pull metadata (specifically corresponding author) from pages where unavailable through Pubmed's eUtils XML file. Work in progress 2013 / abandoned in 2014 for more useful projects.

Ruby 4 Updated Nov 9, 2013

[UNMAINTAINED] A Zotero extension for analysis and visualization in the digital humanities.

JavaScript 174 27 Updated May 19, 2017