==40920== Memcheck, a memory error detector ==40920== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward et al. ==40920== Using Valgrind-3.11.0 and LibVEX; rerun with -h for copyright info ==40920== Command: build/msmc -t1 --fixedRecombination -o /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/msmc1.out /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/GL834414.1.MSMC.txt ==40920== read 21 SNPs from file /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/GL834414.1.MSMC.txt estimating scaled mutation rate: 8.25503e-05 input files: ["/localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/GL834414.1.MSMC.txt"] maxIterations: 20 mutationRate: 8.25503e-05 recombinationRate: 2.06376e-05 subpopLabels: [0, 0] timeSegmentPattern: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2] nrThreads: 1 nrTtotSegments: 40 verbose: false outFilePrefix: /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/msmc1.out naiveImplementation: false hmmStrideWidth: 1000 fixedPopSize: false fixedRecombination: true initialLambdaVec: [] directedEmissions: false skipAmbiguous: false indices: [0, 1] logging information written to /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/msmc1.out.log loop information written to /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/msmc1.out.loop.txt final results written to /localscratch/AussieGenomes/Thylacine/paleomix_MEM/msmc/msmc1.out.final.txt [1/20] Baumwelch iteration ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAB87: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAB91: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BABA5: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BABCD: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BABD9: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Use of uninitialised value of size 8 ==40920== at 0x5BAC04: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Use of uninitialised value of size 8 ==40920== at 0x5BAC3B: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Use of uninitialised value of size 8 ==40920== at 0x5BAC4B: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAC3E: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAC50: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAB7A: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Use of uninitialised value of size 8 ==40920== at 0x5BAB80: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAE4E: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAE5B: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BAC3E: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6DA4: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*).__lambda3!(void*, void*).__lambda3(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E70A3: nothrow void rt.tlsgc.scan(void*, scope nothrow void delegate(void*, void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6D3F: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== ==40920== Conditional jump or move depends on uninitialised value(s) ==40920== at 0x5BB646: nothrow ulong gc.gc.Gcx.sweep() (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBFE4: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BA08F: nothrow void* gc.gc.Gcx.bigAlloc(ulong, ref ulong, uint, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BDDCA: nothrow void* gc.gc.GC.runLocked!(nothrow void* gc.gc.GC.mallocNoSync(ulong, uint, ref ulong, const(TypeInfo)), long gc.gc.mallocTime, long gc.gc.numMallocs, ulong, uint, ulong, const(TypeInfo)).runLocked(ref ulong, ref uint, ref ulong, ref const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B76F9: nothrow void* gc.gc.GC.malloc(ulong, uint, ulong*, const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x593C06: gc_qalloc (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5C0764: pure nothrow core.memory.BlkInfo_ rt.lifetime.__arrayAlloc(ulong, const(TypeInfo), const(TypeInfo)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x596A21: _d_newarrayU (in /home/grg/src/msmc/build/msmc) ==40920== by 0x599B5D: pure nothrow void[] rt.lifetime._d_newarrayOpT!(_d_newarrayT)._d_newarrayOpT(const(TypeInfo), ulong[]).foo(const(TypeInfo), ulong[]) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x599CA5: pure nothrow void[] rt.lifetime._d_newarrayOpT!(_d_newarrayT)._d_newarrayOpT(const(TypeInfo), ulong[]).foo(const(TypeInfo), ulong[]) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x599AED: pure nothrow void[] rt.lifetime._d_newarrayOpT!(_d_newarrayT)._d_newarrayOpT(const(TypeInfo), ulong[]) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x596C9E: _d_newarraymTX (in /home/grg/src/msmc/build/msmc) ==40920== * [1/1] Expectation Step, log likelihood: -115.475 * [0/200(max)] Maximization Step==40920== Invalid read of size 8 ==40920== at 0x5BAB80: nothrow void gc.gc.Gcx.mark(void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93F7: nothrow void core.thread.thread_scanAll(scope nothrow void delegate(void*, void*)).__lambda2!(core.thread.ScanType, void*, void*).__lambda2(core.thread.ScanType, void*, void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6CFE: nothrow void core.thread.scanAllTypeImpl(scope nothrow void delegate(core.thread.ScanType, void*, void*), void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C40: nothrow void core.thread.thread_scanAllType(scope nothrow void delegate(core.thread.ScanType, void*, void*)).__lambda2!(void*).__lambda2(void*) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E7BEB: nothrow void core.thread.callWithStackShell(scope nothrow void delegate(void*)) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5E6C1B: thread_scanAllType (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5D93CF: thread_scanAll (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BB2BE: nothrow void gc.gc.Gcx.markAll(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5BBDB8: nothrow ulong gc.gc.Gcx.fullcollect(bool) (in /home/grg/src/msmc/build/msmc) ==40920== by 0x5B9BD6: nothrow void*