@SuLab

Su Lab

Code repos for the Su Lab at The Scripps Research Institute

  • Student course material for the Applied Bioinformatics course at Scripps Research

    Jupyter Notebook 5 Updated Sep 25, 2018
  • A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.

    HTML 3 2 MIT Updated Sep 24, 2018
  • Jupyter Notebook Updated Sep 22, 2018
  • GeneWiki Scheduled Bots

    Python 3 2 MIT Updated Sep 14, 2018
  • A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

    Python 61 15 MIT Updated Sep 11, 2018
  • Scripts for kidney transplantation association study

    Shell Updated Sep 10, 2018
  • JavaScript 1 GPL-3.0 Updated Sep 10, 2018
  • This the material for our TopCoder Challenge

    C++ Updated Aug 9, 2018
  • Mercator app for RNA-seq map

    JavaScript Updated Aug 1, 2018
  • Updated Jul 30, 2018
  • Mercator app for Allen Brain Atlas data

    JavaScript Updated Jul 25, 2018
  • 2 Updated May 25, 2018
  • Jupyter Notebook 1 Updated Mar 30, 2018
  • Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.

    Python 8 7 1 issue needs help Updated Feb 27, 2018
  • Data and source files for work relating to expression map project.

    R Updated Feb 28, 2018
  • Python 2 Updated Feb 14, 2018
  • GeneWiki Organization

    JavaScript 2 1 MIT 3 issues need help Updated Jan 17, 2018
  • Biothings.api repo for Wikidata

    Python 1 MIT Updated Jan 3, 2018
  • Translate neo4j query output to YAML file suitable for importing to NCATS reasoner

    JavaScript 1 Updated Nov 29, 2017
  • Translator Path Prioritization (TraPP) tool

    JavaScript Apache-2.0 Updated Nov 28, 2017
  • Wikidata Semantic Query API

    Python 1 3 Updated Nov 21, 2017
  • BioGPS.org dataset & dataset loading code repository

    CSS 2 Updated Oct 17, 2017
  • A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. LactoBase.org)

    JavaScript Updated Sep 7, 2017
  • Jupyter Notebook 1 Updated Aug 24, 2017
  • Rare disease network.

    Jupyter Notebook 1 Updated Aug 11, 2017
  • Genome data portal for the GeneWiki Project in Wikidata

    Perl 1 MIT Updated Jul 18, 2017
  • 1 1 MIT Updated Jun 12, 2017
  • MyGene.info: A BioThings API for gene annotations

    Python 7 10 Updated Jun 12, 2017
  • MyVariant.info: A BioThings API for human variant annotations

    Python 5 21 Updated Jun 12, 2017
  • BioThings API framework - Making high-performance API for biological annotation data

    Python 5 Apache-2.0 Updated Jun 12, 2017