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sbx_kraken

Tests Condabot Release DockerHub

A Sunbeam extension for taxonomic assignment of reads to databases using Kraken. You can get pre-built kraken databases at the Kraken homepage or build your own then specify the path to your database in the config.

Configuration

  • kraken_db_fp: Is the filepath to a kraken database

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More docs.

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Extension for running kraken2 and kraken2-biom

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