deps(python): bump snakemake from 8.12.0 to 8.16.0 in /dependencies/python

[dependabot]

Bumps snakemake from 8.12.0 to 8.16.0.

Release notes

Sourced from snakemake's releases.

v8.16.0

8.16.0 (2024-07-09)

Features

• added snakemake.script.snakemake for type hinting (#2917) (c85fb4b)

Documentation

• use note directive to align with the capabilities of the used theme (#2950) (fe27405)

v8.15.2

8.15.2 (2024-07-05)

Bug Fixes

• ensure that envvars in local storage prefix are not prematurely expanded by the shell (#2943) (da50f27)
• fix circular import (9e7d56f)

v8.15.1

8.15.1 (2024-07-04)

Bug Fixes

• implement support for --touch on remote storage (if the storage provider supports it) (#2941) (567094d)

v8.15.0

8.15.0 (2024-07-04)

Features

• add can_transfer_local_files to executor plugin interface (#2921) (85a6774)

Bug Fixes

• duplicate wildcards (#2937) (5b6cc02)
• handling of missing attributes in input/output/params lists that have been guarded against misuse (sort, index) (#2928) (1b75087)
• improve error message in case of invalid default storage prefix (3c1065c)
• include more context to syntax errors when rule parsing fails (#2924) (#2926) (3ecffcc)
• parse f-string as-is from source (#2930) (39fc8f7)
• sanitize old local storage copies before evaluating params or resource functions (#2939) (e3075dd)
• suppress printing of non-constant or uninteresting defaults in --help (#2936) (69add30)

... (truncated)

Changelog

Sourced from snakemake's changelog.

8.16.0 (2024-07-09)

Features

• added snakemake.script.snakemake for type hinting (#2917) (c85fb4b)

Documentation

• use note directive to align with the capabilities of the used theme (#2950) (fe27405)

8.15.2 (2024-07-05)

Bug Fixes

• ensure that envvars in local storage prefix are not prematurely expanded by the shell (#2943) (da50f27)
• fix circular import (9e7d56f)

8.15.1 (2024-07-04)

Bug Fixes

• implement support for --touch on remote storage (if the storage provider supports it) (#2941) (567094d)

8.15.0 (2024-07-04)

Features

• add can_transfer_local_files to executor plugin interface (#2921) (85a6774)

Bug Fixes

• duplicate wildcards (#2937) (5b6cc02)
• handling of missing attributes in input/output/params lists that have been guarded against misuse (sort, index) (#2928) (1b75087)
• improve error message in case of invalid default storage prefix (3c1065c)
• include more context to syntax errors when rule parsing fails (#2924) (#2926) (3ecffcc)
• parse f-string as-is from source (#2930) (39fc8f7)
• sanitize old local storage copies before evaluating params or resource functions (#2939) (e3075dd)
• suppress printing of non-constant or uninteresting defaults in --help (#2936) (69add30)

Documentation

• fix code block formatting (#2929) (54a6461)
• fix signature display (bdd732d)

... (truncated)

Commits

• 838b2fc chore(main): release 8.16.0 (#2951)
• c85fb4b feat: added snakemake.script.snakemake for type hinting (#2917)
• 653b4b9 chore: upgrade actions/checkout to v4 (#2946)
• fe27405 docs: use note directive to align with the capabilities of the used theme (#2...
• c707ea8 chore(main): release 8.15.2 (#2944)
• bf3b674 Merge branch 'main' of github.com:snakemake/snakemake
• 9e7d56f fix: fix circular import
• da50f27 fix: ensure that envvars in local storage prefix are not prematurely expanded...
• 0f96338 chore(main): release 8.15.1 (#2942)
• 567094d fix: implement support for --touch on remote storage (if the storage provider...
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