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OASISFormat: 0.2
Name: biocaml
Version: 0.2-dev
Synopsis: The OCaml Bioinformatics Library
Homepage: http://biocaml.org
Authors: Biocaml Team
License: LGPL with OCaml linking exception
Plugins: META (0.2)
BuildTools: ocamlbuild
Flag lwt
Description: Build Lwt dependencies
Default: false
Flag oldapps
Description: Build secondary apps
Default: false
Flag tests
Description: Build tests
Default: false
Flag app
Description: Build the biocaml CLI application (requires Flow)
Default: false
Library biocaml
Path: src/lib
FindlibName: biocaml
BuildDepends: core, sexplib.syntax, threads, zip, unix, xmlm, pcre
XMETARequires: core, threads, zip, unix, xmlm, pcre
Install: true
Modules: Biocaml
, Biocaml_internal_pervasives
, Biocaml_transform
, Biocaml_msg
, Biocaml_zip
, Biocaml_bam
, Biocaml_pos
, Biocaml_about
, Biocaml_accu
, Biocaml_bar
, Biocaml_bed
, Biocaml_bpmap
, Biocaml_cel
, Biocaml_chrName
, Biocaml_entrez
, Biocaml_fasta
, Biocaml_fastq
, Biocaml_genomeMap
, Biocaml_gff
, Biocaml_histogram
, Biocaml_interval_tree
, Biocaml_iset
, Biocaml_jaspar
, Biocaml_line
, Biocaml_lines
, Biocaml_math
, Biocaml_phred_score
, Biocaml_pwm
, Biocaml_range
, Biocaml_roc
, Biocaml_romanNum
, Biocaml_rSet
, Biocaml_sam
, Biocaml_sbml
, Biocaml_seq
, Biocaml_solexa_score
, Biocaml_sgr
, Biocaml_strandName
, Biocaml_stream
, Biocaml_streamable
, Biocaml_track
, Biocaml_tags
, Biocaml_wig
, Biocaml_mzData
, Biocaml_table
, Biocaml_transcripts
CSources: biocaml_pwm_stub.c, biocaml_mzData_stubs.c
CCOpt: -O3
Executable gff_counts
Path: src/app
MainIs: gff_counts.ml
Build$: flag(oldapps)
BuildDepends: getopt, biocaml
CompiledObject: best
Executable gff_to_bed
Path: src/app
MainIs: gff_to_bed.ml
Build$: flag(oldapps)
BuildDepends: getopt, biocaml
CompiledObject: best
Executable gff_to_table
Path: src/app
MainIs: gff_to_table.ml
Build$: flag(oldapps)
BuildDepends: getopt, biocaml
CompiledObject: best
Executable sgr_to_wig
Path: src/app
MainIs: sgr_to_wig.ml
Build$: flag(oldapps)
BuildDepends: getopt, biocaml
CompiledObject: best
Executable wig_correlate
Path: src/app
MainIs: wig_correlate.ml
Build$: flag(oldapps)
BuildDepends: getopt, biocaml
CompiledObject: best
Executable biocaml
Path: src/app
MainIs: biocaml_main.ml
Build$: flag(app)
BuildDepends: flow, biocaml
CompiledObject: best
Executable tests_main
Path: src/tests
MainIs: main.ml
Install: false
CompiledObject: native
Build$: flag(tests)
BuildDepends: threads, unix, oUnit (>= 1.1.0), biocaml
Executable lwt_tests
Path: src/lwt_tests
MainIs: main.ml
Install: false
CompiledObject: native
Build$: flag(lwt) && flag(tests)
BuildDepends: biocaml, lwt.unix
Test main
Command: $tests_main
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